CN188340

Overview
NameCN188340
Unique NameCN188340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.906e-65
Identity = 135/228 (59.21%), Postives = 151/228 (66.23%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMR 690
            D+   KS V D+VLVGGSTRIPKVQ+LL+ FF+GK+  K INPDE           +LSGE  E V D           GIET GGVMTTLI RNT IPTKK QIFST +DNQP VLIQV+EGERA  KDNN LGKFELT IPPAPRGVPQI V F +DANGIL V A DK  G    ITITNDKGRLSKE+I+RMV+                   NSLENYA+ ++
Sbjct:  367 DAGFKKSDVDDIVLVGGSTRIPKVQELLEKFFDGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVHDIVLLDVNPLTLGIETTGGVMTTLINRNTAIPTKKSQIFSTAADNQPTVLIQVFEGERALAKDNNKLGKFELTSIPPAPRGVPQIEVTFSLDANGILKVEAMDKGTGKSESITITNDKGRLSKEDIDRMVEEAEKYAEQDSELKAKIESRNSLENYAHMLK 592          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.316e-64
Identity = 129/229 (56.33%), Postives = 153/229 (66.81%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+ +    + ++VLVGGSTRIPKVQQL++++FNGKE  + INPDE           +LSGE  E   D           GIET GGVMT LIPRNT IPTKK QIFST +DNQP V IQVYEGER+ TKDN+LLGKF+LTGIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNQI I ND+ RLS E+IERM+                    N LE+YAY+++N
Sbjct:  357 DADLKTDDIDEIVLVGGSTRIPKVQQLVKEYFNGKEPSRGINPDEAVAYGAAVQAGVLSGE--EDTGDLVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQPTVTIQVYEGERSMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDVNGILKVTAEDKGTGSKNQIVIQNDQNRLSPEDIERMINDAEKYADEDKKVKEKVDAKNELESYAYSLKN 583          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.718e-64
Identity = 129/229 (56.33%), Postives = 154/229 (67.25%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            DS + KS + ++VLVGGSTRIPK+QQL+++ FNGKE  + INPDE           +LSG+  +   D           GIET GGVMT LIPRNT +PTKK QIFST SDNQP V I+VYEGER  TKDN+LLG F+LTGIPPAPRGVPQI V F+ID NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                    N LE+YAY+++N
Sbjct:  349 DSDLKKSDIDEIVLVGGSTRIPKIQQLVKELFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVTDAEKFAEEDKKLKERIDTRNELESYAYSLKN 575          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.244e-64
Identity = 129/229 (56.33%), Postives = 154/229 (67.25%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            DS + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+  +   D           GIET GGVMT LIPRNT +PTKK QI ST SDNQP V I+VYEGER  TKDN+LLG F+LTGIPPAPRGVPQI V F+ID NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                    N LE+YAY+++N
Sbjct:  348 DSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQISSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKRLKERIDTRNELESYAYSLKN 574          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.931e-64
Identity = 128/229 (55.90%), Postives = 154/229 (67.25%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+ ++K  VH++VLVGGSTRIPKVQQL++DFF GKE  + INPDE           +LSGE  +               GIET GGVMT LIPRNT IPTKK Q+FST SDNQ  V IQVYEGER  TKDN+LLGKF+LTGIPPAPRG+PQI V F+IDANGIL VSAEDK  G K +I ITND+ RL+ E+I+RM++                   N LE+YAY+++N
Sbjct:  348 DADMNKKDVHEIVLVGGSTRIPKVQQLVKDFFGGKEPSRGINPDEAVAYGAAVQAGVLSGE--QDTDAIVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQVFSTASDNQHTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGIPQIEVSFEIDANGILQVSAEDKGTGNKEKIVITNDQNRLTPEDIDRMIRDAEKFADEDKKLKERVESRNELESYAYSLKN 574          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.528e-63
Identity = 122/228 (53.51%), Postives = 156/228 (68.42%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMR 690
            D+K+DKSQ+HD+VLVGGSTRIPKVQ LLQ+FF GK L  SINPDE           ILSG+ + +++D           GIETAGGVMT LI RN+ IP K+ + F+TY+DNQP V IQV+EGERA TKDNN+LG F+LTG+PPAPRGVP+I+V FD+DANGIL+V+A+++  G    ITI NDKGRLS+ +I+RM+                    N LE Y + ++
Sbjct:  321 DAKMDKSQIHDIVLVGGSTRIPKVQNLLQNFFGGKTLNLSINPDEAVAYGAAIQAAILSGDKSSEIKDVLLVDVAPLSLGIETAGGVMTKLIERNSRIPCKQSKTFTTYADNQPAVTIQVFEGERALTKDNNVLGTFDLTGVPPAPRGVPKIDVTFDLDANGILNVTAKEQGTGNAKNITIKNDKGRLSQADIDRMLSEAEKYAEEDERHRQRIAARNQLETYLFGVK 548          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.429e-63
Identity = 120/228 (52.63%), Postives = 157/228 (68.86%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMR 690
            DSK+DKSQVH++VLVGGS+RIPKV+QLL +FFNGK+L +++NPDE           IL G+ +EK+Q+           G+ETAGG+MT +I RNTTIP KK ++F+TYSDNQ  V IQ++EGER  TKDNN LG F L GIPPA RGVPQI V FD+DANGIL+V+A DK+      ITITN++GR S+++IERM++                   N LENY ++++
Sbjct:  323 DSKLDKSQVHEIVLVGGSSRIPKVRQLLSNFFNGKKLNETVNPDEAVAYGAAIQAAILVGQTDEKLQNIVLVDVTPLSLGLETAGGIMTNIIDRNTTIPCKKSRVFTTYSDNQTVVTIQIFEGERKFTKDNNNLGTFNLEGIPPAQRGVPQIEVTFDLDANGILNVTAADKSTNKSKNITITNNRGRFSEDQIERMIREAKEFEEADNKKKAAVDSKNELENYTHSVK 550          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.429e-63
Identity = 127/232 (54.74%), Postives = 154/232 (66.38%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDF--FNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K +KS++ ++VLVGGSTRIPK+QQ++++F  FNGKE  + INPDE           I+ GE   ++QD           GIET GG+MT LI RNT IPTKK Q FSTY DNQP VLIQV+EGERA TKDN+LLGKFEL+GIPPA RGVP+I V F +D NGILHV AEDK  G    ITITNDKGRLSKE+IE+M+                    N L+NY  +M+ T
Sbjct:  346 DAKYEKSKIDEIVLVGGSTRIPKIQQIIKEFEFFNGKEPNRGINPDEAVAYGAAIQAGIILGE---ELQDVVLLDVTPLTLGIETVGGIMTQLIKRNTVIPTKKSQTFSTYQDNQPAVLIQVFEGERALTKDNHLLGKFELSGIPPAQRGVPKIEVTFTVDKNGILHVEAEDKGTGKSRGITITNDKGRLSKEQIEKMINDAEKFADEDKNLREKVEAKNKLDNYIQSMKAT 574          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.101e-62
Identity = 126/219 (57.53%), Postives = 148/219 (67.58%), Query Frame = 1
Query:   37 DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+  +   D           GIET GGVMT LIPRNT +PTKK QIFST SDNQP V I+VYEGER  TKDN+LLG F+LTGIPPAPRGVPQI V F+ID NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                    N LE+YAY ++N
Sbjct:    2 EIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYCLKN 218          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.174e-61
Identity = 123/229 (53.71%), Postives = 148/229 (64.63%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            DS + K  + D+VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           ++SG   E   D           GIET GGVMT LIPRNT IPTKK QIFST +DNQP V IQV+EGER  TKDN+ LGKF+LTGIPPAPRG+PQI V F+ID NGIL VSAEDK  G K+ I I  +  R++ EEIERM+Q                   N LE+ AY+++N
Sbjct:  347 DSGLKKEDIDDIVLVGGSTRIPKIQQLVKEFFNGKEPIRGINPDEAVAYGAAVQAGVISGV--EDTGDIVLLDVCPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQPTVTIQVFEGERPMTKDNHFLGKFDLTGIPPAPRGLPQIEVTFEIDVNGILRVSAEDKGTGKKSNIVINKETNRITPEEIERMIQDAEKFSDQDKQVKERVEVRNDLESLAYSIKN 573          
The following BLAST results are available for this feature:
BLAST of CN188340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_DEBHA5.906e-6559.2178 kDa glucose-regulated protein homolog OS=Debary... [more]
GRP78_APLCA1.316e-6456.3378 kDa glucose-regulated protein OS=Aplysia califo... [more]
GRP78_XENLA1.718e-6456.3378 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_SPETR2.244e-6456.3378 kDa glucose-regulated protein OS=Spermophilus t... [more]
HSP7C_DROME2.931e-6455.90Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
HSP68_DROME5.528e-6353.51Heat shock protein 68 OS=Drosophila melanogaster G... [more]
HSP70_MIMIV9.429e-6352.63Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]
GRP78_PLAFO9.429e-6354.7478 kDa glucose-regulated protein homolog OS=Plasmo... [more]
GRP78_PIG2.101e-6257.5378 kDa glucose-regulated protein (Fragment) OS=Sus... [more]
GRP78_ECHGR5.174e-6153.7178 kDa glucose-regulated protein OS=Echinococcus g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188340 ID=CN188340; Name=CN188340; organism=Citrus sinensis; type=EST; length=698bp
GCGTGCGACTCAAAAATTGATAAGAGCCAGGTTCATGATGTTGTTCTTGT
TGGTGGGTCAACAAGAATTCCAAAAGTTCAACAATTGTTGCAAGACTTCT
TTAACGGGAAGGAACTGTGCAAGAGCATAAACCCTGATGAGGCTGTTGCT
TATGGAGCTGCTGTGCAGGCTGCTATTTTGAGCGGTGAAGGGAATGAGAA
GGTTCAAGATTTGCTGCTGCTTGATGTTACACCTCTCAGCCTCGGTATTG
AGACTGCTGGCGGTGTAATGACAACCTTGATTCCAAGGAACACGACAATT
CCTACAAAGAAAGAGCAAATTTTCTCAACTTATTCAGACAATCAGCCTGG
TGTGTTGATTCAGGTGTATGAAGGTGAAAGAGCTAGAACAAAAGATAACA
ATCTGCTTGGGAAATTCGAGCTCACGGGCATTCCTCCGGCACCAAGAGGT
GTTCCTCAGATCAATGTGTGCTTTGACATTGATGCTAATGGTATATTGCA
TGTCTCCGCAGAAGATAAGACTGCTGGAGTGAAGAACCAGATTACAATCA
CCAACGATAAGGGAAGATTGAGCAAGGAGGAAATTGAGAGAATGGTGCAA
GAGGCAGAGAAGTACAAGGCAGAGGATGAAGAGGTAAAGAAGAAAGTAGA
GGCCAAGAACTCATTGGAGAATTATGCTTATAACATGAGGAACACTGT
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