CN188340

Overview
NameCN188340
Unique NameCN188340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.658e-78
Identity = 148/229 (64.63%), Postives = 174/229 (75.98%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+Q+HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD           G+ETAGGVMT LI RN+TIPTK+ QIF+TYSDNQPGVLIQVYEGERA T+DNNLLG+FEL+GIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                   N+LE+YA+NM++
Sbjct:  323 DAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKS 551          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.658e-78
Identity = 148/229 (64.63%), Postives = 174/229 (75.98%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+Q+HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD           G+ETAGGVMT LI RN+TIPTK+ QIF+TYSDNQPGVLIQVYEGERA T+DNNLLG+FEL+GIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                   N+LE+YA+NM++
Sbjct:  323 DAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEIQRERVGAKNALESYAFNMKS 551          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.658e-78
Identity = 148/229 (64.63%), Postives = 174/229 (75.98%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+Q+HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD           G+ETAGGVMT LI RN+TIPTK+ QIF+TYSDNQPGVLIQVYEGERA T+DNNLLG+FEL+GIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                   N+LE+YA+NM++
Sbjct:  323 DAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKS 551          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 6.083e-78
Identity = 147/229 (64.19%), Postives = 175/229 (76.42%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+++HD+VLVGGSTRIPKVQ+LLQD+FNG++L KSINPDE           IL G+ +EKVQD           G+ETAGGVMT LI RN+TIPTK+ QIF+TYSDNQPGVLIQVYEGERA T+DNNLLG+F+LTGIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                   N+LE+YA+NM++
Sbjct:  325 DAKMDKAKIHDIVLVGGSTRIPKVQKLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKS 553          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 290.426 bits (742), Expect = 6.083e-78
Identity = 147/229 (64.19%), Postives = 175/229 (76.42%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+++HD+VLVGGSTRIPKVQ+LLQD+FNG++L KSINPDE           IL G+ +EKVQD           G+ETAGGVMT LI RN+TIPTK+ QIF+TYSDNQPGVLIQVYEGERA T+DNNLLG+F+LTGIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                   N+LE+YA+NM++
Sbjct:  325 DAKMDKAKIHDIVLVGGSTRIPKVQKLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKS 553          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 7.945e-78
Identity = 151/230 (65.65%), Postives = 170/230 (73.91%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DKSQVHD+VLVGGSTRIPKVQ+LL D F+GKEL KSINPDE           ILSG+ +E VQD           GIETAGGVMT LI RNTTIPTK  Q F+TYSDNQPGVLIQVYEGERA TKDNNLLGKFEL+GIPPAPRGVPQI V FDIDANGIL+VSA DK+ G +N+ITITNDKGRLSK++IERMV                    N LE+YA+N++ T
Sbjct:  324 DAKMDKSQVHDIVLVGGSTRIPKVQKLLSDLFSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQT 553          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.355e-77
Identity = 147/229 (64.19%), Postives = 175/229 (76.42%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DKSQ+H++VLVGGSTRIPKVQ+LLQDFFNG+EL KSINPDE           IL G+ +E VQD           G+ETAGGVMT LI RNTTIPTK+ Q F+TYSDNQPGVLIQV+EGERA TKDNNLLGKFEL+GIPPAPRGVPQI V FDIDANGIL+VSA +K++G +N+ITITNDKGRLSKE+IE+MVQ                   N+LE+YA+N+++
Sbjct:  324 DAKLDKSQIHEIVLVGGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTVLIKRNTTIPTKQTQSFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVEKSSGKQNKITITNDKGRLSKEDIEKMVQEAEKYKADDDAQRERVDAKNALESYAFNLKS 552          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.770e-77
Identity = 147/229 (64.19%), Postives = 173/229 (75.55%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+Q+HD+VLVGGSTRIPKVQ+LLQDFFNG++L KSINPDE           IL G+ +E VQD           G+ETAGGVMT LI RN+TIPTK+ Q F+TYSDNQPGVLIQVYEGERA T+DNNLLG+FEL+GIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                   N+LE+YA+NM++
Sbjct:  323 DAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKS 551          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.770e-77
Identity = 147/229 (64.19%), Postives = 174/229 (75.98%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+++HD+VLVGGSTRIPKVQ+LLQD+FNG++L KSINPDE           IL G+ +EKVQD           G+ETAGGVMT LI RN+TIPTK+ QIF+TYSDNQPGVLIQVYEGERA TKDNNLLG+F+LTGIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMV                    N+LE+YA+NM++
Sbjct:  325 DAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKS 553          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.770e-77
Identity = 147/229 (64.19%), Postives = 174/229 (75.98%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRN 693
            D+K+DK+++HD+VLVGGSTRIPKVQ+LLQD+FNG++L KSINPDE           IL G+ +EKVQD           G+ETAGGVMT LI RN+TIPTK+ QIF+TYSDNQPGVLIQVYEGERA TKDNNLLG+F+LTGIPPAPRGVPQI V FDIDANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMV                    N+LE+YA+NM++
Sbjct:  325 DAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKVNKITITNDKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKS 553          
The following BLAST results are available for this feature:
BLAST of CN188340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71B_BOSMU4.658e-7864.63Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_PIG4.658e-7864.63Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HS71A_BOVIN4.658e-7864.63Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HS71L_RAT6.083e-7864.19Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_MOUSE6.083e-7864.19Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP7A_CAEEL7.945e-7865.65Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP70_XENLA1.355e-7764.19Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S... [more]
HSP71_RAT1.770e-7764.19Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HS71L_MACFA1.770e-7764.19Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HS71L_HUMAN1.770e-7764.19Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188340 ID=CN188340; Name=CN188340; organism=Citrus sinensis; type=EST; length=698bp
GCGTGCGACTCAAAAATTGATAAGAGCCAGGTTCATGATGTTGTTCTTGT
TGGTGGGTCAACAAGAATTCCAAAAGTTCAACAATTGTTGCAAGACTTCT
TTAACGGGAAGGAACTGTGCAAGAGCATAAACCCTGATGAGGCTGTTGCT
TATGGAGCTGCTGTGCAGGCTGCTATTTTGAGCGGTGAAGGGAATGAGAA
GGTTCAAGATTTGCTGCTGCTTGATGTTACACCTCTCAGCCTCGGTATTG
AGACTGCTGGCGGTGTAATGACAACCTTGATTCCAAGGAACACGACAATT
CCTACAAAGAAAGAGCAAATTTTCTCAACTTATTCAGACAATCAGCCTGG
TGTGTTGATTCAGGTGTATGAAGGTGAAAGAGCTAGAACAAAAGATAACA
ATCTGCTTGGGAAATTCGAGCTCACGGGCATTCCTCCGGCACCAAGAGGT
GTTCCTCAGATCAATGTGTGCTTTGACATTGATGCTAATGGTATATTGCA
TGTCTCCGCAGAAGATAAGACTGCTGGAGTGAAGAACCAGATTACAATCA
CCAACGATAAGGGAAGATTGAGCAAGGAGGAAATTGAGAGAATGGTGCAA
GAGGCAGAGAAGTACAAGGCAGAGGATGAAGAGGTAAAGAAGAAAGTAGA
GGCCAAGAACTCATTGGAGAATTATGCTTATAACATGAGGAACACTGT
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