CN188340

Overview
NameCN188340
Unique NameCN188340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBA (Chaperone protein dnaK OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 105/230 (45.65%), Postives = 135/230 (58.70%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+ +  S++ +V+LVGGS RIP VQ L+++ F GKE  KS+NPDE           +L+G+    V D           GIET GGVMT LI RNTTIPT+K Q+FST +DNQ  V + V +GER     N  LG+F+L GIP APRGVPQI V FDIDANGI+HVSA+D   G + +I I +  G LS+EEI++MV+                   N LE   Y +  T
Sbjct:  322 DAGLSASEIDEVILVGGSIRIPAVQALVKEIF-GKEPNKSVNPDEVVAVGAAIQGGVLAGD----VTDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTRKSQVFSTAADNQTTVSVHVLQGEREMASANRTLGRFDLVGIPSAPRGVPQIEVTFDIDANGIVHVSAKDLGTGKEQKIRIESSSG-LSEEEIKKMVKDAEAHAEEDKKLREAADTKNELEAIVYQLEKT 545          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_BURCJ (Chaperone protein dnaK OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  S + DV+LVGG TR+PKV + +++FF GK+  + +NPDE           +LSG+     +D           GIET GGVMT +I +NTTIPTK  Q++ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGILHV A+DK  G +N+ITI  + G LS+ EI++M++
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIK 518          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_BURCH (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain HI2424) GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  S + DV+LVGG TR+PKV + +++FF GK+  + +NPDE           +LSG+     +D           GIET GGVMT +I +NTTIPTK  Q++ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGILHV A+DK  G +N+ITI  + G LS+ EI++M++
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIK 518          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_BURCC (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain MC0-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  S + DV+LVGG TR+PKV + +++FF GK+  + +NPDE           +LSG+     +D           GIET GGVMT +I +NTTIPTK  Q++ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGILHV A+DK  G +N+ITI  + G LS+ EI++M++
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIK 518          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_BURCA (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain AU 1054) GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  S + DV+LVGG TR+PKV + +++FF GK+  + +NPDE           +LSG+     +D           GIET GGVMT +I +NTTIPTK  Q++ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGILHV A+DK  G +N+ITI  + G LS+ EI++M++
Sbjct:  327 DAGVKVSDIDDVILVGGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIK 518          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_BRECH (Chaperone protein dnaK OS=Brevibacillus choshinensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 102/198 (51.52%), Postives = 127/198 (64.14%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  +++  V+LVGGSTRIP VQ+ ++ F  GKE  K +NPDE           +L+G+    V+D           GIET GGV T LI RNTTIPT K Q+FST +DNQPGV I V +GER    DN  LG+F L  IPPAPRGVPQI V FDIDANGI++V A+D   G + +ITIT   G LS EEI+RMV+
Sbjct:  296 DAGLTPNEIDKVILVGGSTRIPAVQEAIKKF-TGKEPHKGVNPDEVVALGAAVQAGVLTGD----VKDVVLLDVTPLSLGIETLGGVFTKLIDRNTTIPTSKSQVFSTAADNQPGVEIHVLQGERQMAADNKTLGRFNLNDIPPAPRGVPQIEVSFDIDANGIVNVRAKDLGTGKEQRITITASSG-LSDEEIDRMVK 487          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_BORRA (Chaperone protein dnaK OS=Borrelia recurrentis (strain A1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 102/198 (51.52%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  S +++V+LVGGSTRIP +Q+++++ F G+E  K +NPDE           IL+GE  + V             GIET GGVMT LI RNTTIPTKK Q+FST +DNQ  V I+V +GER     N +LG F L GIP APRGVPQI V FDIDANGI+HVSA+D   G + +I I +  G LS+EEIERMV+
Sbjct:  321 DAGLKASDINEVILVGGSTRIPAIQKIVKEIF-GQEPNKGVNPDEAVAIGAAIQGGILTGEAKDMV----LLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQTSVDIKVLQGEREMASQNRVLGNFILDGIPAAPRGVPQIEVSFDIDANGIVHVSAKDMGTGKEQKIRIESSSG-LSEEEIERMVK 512          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_BORDL (Chaperone protein dnaK OS=Borrelia duttonii (strain Ly) GN=dnaK PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 102/198 (51.52%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  S +++V+LVGGSTRIP +Q+++++ F G+E  K +NPDE           IL+GE  + V             GIET GGVMT LI RNTTIPTKK Q+FST +DNQ  V I+V +GER     N +LG F L GIP APRGVPQI V FDIDANGI+HVSA+D   G + +I I +  G LS+EEIERMV+
Sbjct:  321 DAGLKASDINEVILVGGSTRIPAIQKIVKEIF-GQEPNKGVNPDEAVAIGAAIQGGILTGEAKDMV----LLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQTSVDIKVLQGEREMASQNRVLGNFILDGIPAAPRGVPQIEVSFDIDANGIVHVSAKDMGTGKEQKIRIESSSG-LSEEEIERMVK 512          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 100/198 (50.51%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +    V +V+LVGG TR+PKVQ+++ + F GK   K +NPDE           IL G+    V++           GIET GG+ T LI RNTTIPTKK Q+FST +DNQ  V I+V +GER    DN +LG+F+L GIPPAPRG+PQI V FDIDANGI+ VSA+DK+ G + QITI    G LS++EIE+MV+
Sbjct:  369 DANVSIKDVDEVLLVGGMTRVPKVQEVVLNIF-GKSPSKGVNPDEAVAMGAAIQGGILRGD----VKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITI-RSSGGLSEDEIEKMVK 560          
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: DNAK_WOLWR (Chaperone protein dnaK OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=dnaK PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 102/198 (51.52%), Postives = 127/198 (64.14%), Query Frame = 1
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 600
            D+ +  SQ+ +VVLVGG TR+PKV + +++FF GK+  + +NPDE           I+ G+    V+D           GIET GGV T LI RNTTIPTKK Q+FST  DNQ  V I+V++GER    DN LLG+F L GIPPAPRG PQI V FDIDANGI HVSA+DK  G + +I I    G LS +EI RMV+
Sbjct:  320 DAGLSASQIGEVVLVGGMTRMPKVIEKVKEFF-GKDPHRGVNPDEVVAIGAAIQAGIIQGD----VRDVLLLDVTPLSLGIETLGGVFTPLIERNTTIPTKKSQVFSTAEDNQTAVTIKVHQGERKLAVDNKLLGQFSLEGIPPAPRGRPQIEVTFDIDANGIAHVSAKDKATGKEQKIRI-QSSGGLSDDEINRMVK 511          
The following BLAST results are available for this feature:
BLAST of CN188340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_LEPBA1.047e-4545.65Chaperone protein dnaK OS=Leptospira biflexa serov... [more]
DNAK_BURCJ1.047e-4549.49Chaperone protein dnaK OS=Burkholderia cepacia (st... [more]
DNAK_BURCH1.047e-4549.49Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCC1.047e-4549.49Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCA1.047e-4549.49Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BRECH1.047e-4551.52Chaperone protein dnaK OS=Brevibacillus choshinens... [more]
DNAK_BORRA1.047e-4551.52Chaperone protein dnaK OS=Borrelia recurrentis (st... [more]
DNAK_BORDL1.047e-4551.52Chaperone protein dnaK OS=Borrelia duttonii (strai... [more]
HSP7M_PHAVU1.368e-4550.51Heat shock 70 kDa protein, mitochondrial OS=Phaseo... [more]
DNAK_WOLWR1.368e-4551.52Chaperone protein dnaK OS=Wolbachia sp. subsp. Dro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188340 ID=CN188340; Name=CN188340; organism=Citrus sinensis; type=EST; length=698bp
GCGTGCGACTCAAAAATTGATAAGAGCCAGGTTCATGATGTTGTTCTTGT
TGGTGGGTCAACAAGAATTCCAAAAGTTCAACAATTGTTGCAAGACTTCT
TTAACGGGAAGGAACTGTGCAAGAGCATAAACCCTGATGAGGCTGTTGCT
TATGGAGCTGCTGTGCAGGCTGCTATTTTGAGCGGTGAAGGGAATGAGAA
GGTTCAAGATTTGCTGCTGCTTGATGTTACACCTCTCAGCCTCGGTATTG
AGACTGCTGGCGGTGTAATGACAACCTTGATTCCAAGGAACACGACAATT
CCTACAAAGAAAGAGCAAATTTTCTCAACTTATTCAGACAATCAGCCTGG
TGTGTTGATTCAGGTGTATGAAGGTGAAAGAGCTAGAACAAAAGATAACA
ATCTGCTTGGGAAATTCGAGCTCACGGGCATTCCTCCGGCACCAAGAGGT
GTTCCTCAGATCAATGTGTGCTTTGACATTGATGCTAATGGTATATTGCA
TGTCTCCGCAGAAGATAAGACTGCTGGAGTGAAGAACCAGATTACAATCA
CCAACGATAAGGGAAGATTGAGCAAGGAGGAAATTGAGAGAATGGTGCAA
GAGGCAGAGAAGTACAAGGCAGAGGATGAAGAGGTAAAGAAGAAAGTAGA
GGCCAAGAACTCATTGGAGAATTATGCTTATAACATGAGGAACACTGT
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