CN188340

Overview
NameCN188340
Unique NameCN188340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.437e-76
Identity = 145/230 (63.04%), Postives = 170/230 (73.91%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DK Q+HD+VLVGGSTRIPKVQ+LLQDFFNGKEL KSINPDE           IL G+ +E VQD           GIETAGGVMTTLI RNTTIPTK+ QIF+TY+DNQPGVLIQV+EGERA T+DNN LGKFEL+ IPPAPRGVPQ+ V FDIDANGIL+V+A +K+ G +N+ITITNDKGRLSKE+IERMV                    N LE+Y + +R+T
Sbjct:  323 DAKMDKGQIHDIVLVGGSTRIPKVQRLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEAVQDLLLLDVTPLSLGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQPGVLIQVFEGERAMTRDNNSLGKFELSAIPPAPRGVPQVEVTFDIDANGILNVTALEKSTGKENRITITNDKGRLSKEDIERMVNDAEAYRQADEQQRDRINAKNQLESYCFQLRST 552
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 7.437e-76
Identity = 146/230 (63.48%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            DSKIDKS V+++VLVGGSTRIP++Q+L+ DFFNGKE CKSINPDE           IL G+ +EK QD           GIETAGGVMT LI RNTTIPTKK ++FSTY+DNQPGVLIQV+EGERARTKD NLLGKFEL+GIPPAPRGVPQI V FD+DANGIL+VSA +K  G   +ITITNDKGRLSKEEI+RMV                    N LE+YAY++RN+
Sbjct:  321 DSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNS 550
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.712e-76
Identity = 146/230 (63.48%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DK  VH++VLVGGSTRIPKVQ+LLQDFFNG+EL KSINPDE           IL+G+ +E VQD           G+ETAGGVMT LI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGERA  +DNNLLGKFEL+GIPP PRGVPQI V FDIDANGIL+VSA DK+ G +N+ITIT DKGRLSKEEIERMV                    N LE+YA++M++T
Sbjct:  325 DAKLDKGAVHEIVLVGGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILTGDKSEAVQDLLLLDVAPLSLGLETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMKRDNNLLGKFELSGIPPGPRGVPQIEVTFDIDANGILNVSAVDKSTGKQNKITITRDKGRLSKEEIERMVNDAEKFKQEDEKQRDRVAAKNGLESYAFSMKST 554
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.268e-75
Identity = 143/230 (62.17%), Postives = 170/230 (73.91%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DK+Q+HD+VLVGGSTRIPK+Q+LLQDFFNG+EL KSINPDE           +L G+  EKVQD           G+ETAGGVMTTLI RN TIPTK+ Q F+TYSDNQPGVLIQVYEGERA T+DNNLLG+FEL+GIPPAPRGVPQI V FDIDANGIL V+A D++ G  N+ITITNDKGRLSKEE+ERMV+                   NSLE Y ++++ +
Sbjct:  325 DAKLDKAQIHDIVLVGGSTRIPKIQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDLLLLDVAPLSLGLETAGGVMTTLIQRNATIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILSVTATDRSTGRANKITITNDKGRLSKEEVERMVREADEYKVEDEAQRDRVAAKNSLEAYVFHVKGS 554
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.657e-75
Identity = 145/230 (63.04%), Postives = 168/230 (73.04%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DK+Q+HDVVLVGGSTRIPKVQ+LLQDFFNGKEL KSINPDE           +L G+  EKVQD           G+ETAGGVMTTLI RN TIPTK+ Q F+TYSDNQPGV IQVYEGERA TKDNNLLG+FEL+GIPPAPRGVPQI V FDIDANGIL V+A D++ G  N+ITITNDKGRLSKEE+ERMV                    NSLE + ++++ +
Sbjct:  325 DAKLDKAQIHDVVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDLLLLDVAPLSLGLETAGGVMTTLIQRNATIPTKQTQTFTTYSDNQPGVFIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILSVTATDRSTGKANKITITNDKGRLSKEEVERMVHEAEQYKAEDEAQRDRVAAKNSLEAHVFHVKGS 554
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.657e-75
Identity = 144/230 (62.61%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DK Q+ ++VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           IL G+ +E VQD           GIETAGGVMT LI RNTTIPTK+ Q F+TYSDNQ  VL+QVYEGERA TKDNNLLGKF+LTGIPPAPRGVPQI V FDIDANGIL+V+A DK+ G +N+ITITNDKGRLSK++I+RMVQ                   N+LE+Y YN++ T
Sbjct:  326 DAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNALESYTYNIKQT 555
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 3.691e-75
Identity = 145/230 (63.04%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DKS +HD+VLVGGSTRIPKVQ+LLQD FNGKEL KSINPDE           IL G+ +++VQD           GIETAGGVM+ LI RNTTIPTK+ Q F+TYSDNQPGVLIQVYEGERA TKDNNLLGKFEL+GIPPAPRGVPQI V FDIDANGIL+V+A +++   +N+ITITNDKGRLSKE+IERMV                    N LE+Y +NM+ T
Sbjct:  323 DAKLDKSVIHDIVLVGGSTRIPKVQRLLQDLFNGKELNKSINPDEAVAYGAAVQAAILHGDKSQEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVTALERSTNKENKITITNDKGRLSKEDIERMVNEAEKYRNEDEKQKETIAAKNGLESYCFNMKAT 552
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.691e-75
Identity = 145/230 (63.04%), Postives = 165/230 (71.74%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            DSKIDK  VH++VLVGGSTRIPKVQ+LL DFFNG+EL KSINPDE           ILSG+ +EK QD           GIETAGGV T LI RNTT+PTKK +IFSTY+DNQPGVLIQV+EGERARTKDNNLLGKFEL+GIPPAPRGVPQI V FD+DAN IL+VSA +K  G   +ITI NDKGRLS E+IE M++                   N LE+Y YN+RNT
Sbjct:  321 DSKIDKGSVHEIVLVGGSTRIPKVQKLLTDFFNGRELNKSINPDEAVAYGAAVQAAILSGDTSEKTQDLLLLDVAPLSMGIETAGGVFTPLIKRNTTVPTKKSEIFSTYADNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQIEVTFDVDANAILNVSAAEKGTGKSEKITIRNDKGRLSSEQIEEMLKQAEQFAEEDKQALERTQAKNGLESYIYNVRNT 550
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.691e-75
Identity = 143/230 (62.17%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DK Q+ ++VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           IL G+ +E VQD           GIETAGGVMT LI RNTTIPTK+ Q F+TYSDNQ  VL+QVYEGERA TKDNNLLGKF+LTGIPPAPRGVPQI V FDIDANGIL+V+A DK+ G +N+ITITNDKGRLSK++I+RMVQ                   N++E+Y YN++ T
Sbjct:  326 DAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQT 555
[Close]
BLAST of CN188340 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.691e-75
Identity = 143/230 (62.17%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:    7 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXXNSLENYAYNMRNT 696
            D+K+DK Q+ ++VLVGGSTRIPK+Q+LLQDFFNGKEL KSINPDE           IL G+ +E VQD           GIETAGGVMT LI RNTTIPTK+ Q F+TYSDNQ  VL+QVYEGERA TKDNNLLGKF+LTGIPPAPRGVPQI V FDIDANGIL+V+A DK+ G +N+ITITNDKGRLSK++I+RMVQ                   N++E+Y YN++ T
Sbjct:  326 DAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQT 555
The following BLAST results are available for this feature:
BLAST of CN188340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7A_DROME7.437e-7663.04Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]
HSP71_SCHPO7.437e-7663.48Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HSP70_ECHGR9.712e-7663.48Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HSP76_PIG1.268e-7562.17Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP76_HUMAN1.657e-7563.04Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP72_HUMAN1.657e-7562.61Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP7D_DROME3.691e-7563.04Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP72_USTMA3.691e-7563.04Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
HSP72_RAT3.691e-7562.17Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE3.691e-7562.17Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188340 ID=CN188340; Name=CN188340; organism=Citrus sinensis; type=EST; length=698bp
GCGTGCGACTCAAAAATTGATAAGAGCCAGGTTCATGATGTTGTTCTTGT
TGGTGGGTCAACAAGAATTCCAAAAGTTCAACAATTGTTGCAAGACTTCT
TTAACGGGAAGGAACTGTGCAAGAGCATAAACCCTGATGAGGCTGTTGCT
TATGGAGCTGCTGTGCAGGCTGCTATTTTGAGCGGTGAAGGGAATGAGAA
GGTTCAAGATTTGCTGCTGCTTGATGTTACACCTCTCAGCCTCGGTATTG
AGACTGCTGGCGGTGTAATGACAACCTTGATTCCAAGGAACACGACAATT
CCTACAAAGAAAGAGCAAATTTTCTCAACTTATTCAGACAATCAGCCTGG
TGTGTTGATTCAGGTGTATGAAGGTGAAAGAGCTAGAACAAAAGATAACA
ATCTGCTTGGGAAATTCGAGCTCACGGGCATTCCTCCGGCACCAAGAGGT
GTTCCTCAGATCAATGTGTGCTTTGACATTGATGCTAATGGTATATTGCA
TGTCTCCGCAGAAGATAAGACTGCTGGAGTGAAGAACCAGATTACAATCA
CCAACGATAAGGGAAGATTGAGCAAGGAGGAAATTGAGAGAATGGTGCAA
GAGGCAGAGAAGTACAAGGCAGAGGATGAAGAGGTAAAGAAGAAAGTAGA
GGCCAAGAACTCATTGGAGAATTATGCTTATAACATGAGGAACACTGT
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