CN188339

Overview
NameCN188339
Unique NameCN188339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 60/141 (42.55%), Postives = 81/141 (57.45%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            D NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                   +N LE+YAY+++N + D EK  GKL   DK+ +EKA++E IEWL+ +Q                +  PII+K+Y  G++G  P
Sbjct:  504 DVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY--GSAGPPP 642          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 60/141 (42.55%), Postives = 81/141 (57.45%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            D NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                   +N LE+YAY+++N + D EK  GKL   DK+ +EKA++E IEWL+ +Q                +  PII+K+Y  G++G  P
Sbjct:  504 DVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY--GSAGPPP 642          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 60/141 (42.55%), Postives = 81/141 (57.45%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            D NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                   +N LE+YAY+++N + D EK  GKL   DK+ +EKA++E IEWL+ +Q                +  PII+K+Y  G++G  P
Sbjct:  505 DVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY--GSAGPPP 643          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = -1
Query:  344 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGG 745
            D NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                   +N LE+YAY+++N + D EK  GKL   DK+ +EKA++E IEWL+ +Q                +  PII+K+Y  G
Sbjct:  505 DVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSG 639          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQ--GGASGDVP 745
            DANGIL+V+A +K+ G +N ITITNDKGRLS++EI+RMV                   +NSLENY Y +++++ D+K   KL PA+ +   K I   +EWL+ NQ                +C PI++K+YQ   GA+G +P
Sbjct:  494 DANGILNVTAVEKSTGKQNHITITNDKGRLSQDEIDRMVNDAEKYKAEDEENRKRIEARNSLENYCYGVKSSLEDQKIKEKLQPAEIETCMKTITTILEWLEKNQLAGKDEYEAKQKEAESVCAPIMSKIYQDAAGAAGGMP 635          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 60/142 (42.25%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG--GASGDVP 745
            DANGI++VSA +K     N+I ITNDKGRLSKEEIERM+                   KN LE+YAY++RN++R  K   KL+  DK+K++  ID+ ++WLD NQ                + NPI+ K Y G  GA G  P
Sbjct:  480 DANGIMNVSALEKGTRKTNKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAEASRIRPKNGLESYAYSLRNSLRHSKVDEKLEAGDKEKLKSEIDKTVQWLDENQTATKEEYESQQKELEAVANPIMMKFYAGGEGAPGGFP 621          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 51/133 (38.35%), Postives = 76/133 (57.14%), Query Frame = -1
Query:  347 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG 745
            DANGI+HV+A+D+++G  N+ITITND  RLSK++I+RM+                   KN LE YA+N+++ V D     KL P DK+ + KA+++ ++WLD N                  C+PI+AKM+ G
Sbjct:  481 DANGIMHVTAKDESSGRSNKITITNDSDRLSKDDIDRMINDAERFKAEDDAQRERINAKNQLEGYAFNLKSAVDDAAAQSKLSPGDKETVTKAVNDVLQWLDSNSLADKEEFTYKLEELQKTCSPIMAKMHAG 613          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 60/141 (42.55%), Postives = 79/141 (56.03%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            D NGILHVSAEDK +G K  ITITNDK RLS+ +I+RMV+                  KN+LENY Y ++NT+ D +K  GK++  DK+ IE AI +A+ WLD N                 +  PI +K+Y  GA+G  P
Sbjct:  507 DVNGILHVSAEDKASGSKESITITNDKERLSQADIDRMVKEAADAADEDKAAKERVEAKNTLENYIYQIKNTIGDKDKIGGKIESDDKETIETAISDALSWLDVNSSAEKEEFDEQYKILEKIVQPIFSKLY--GAAGGSP 645          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 58/142 (40.85%), Postives = 75/142 (52.82%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQ--GGASGDVP 745
            DAN IL+VSA +K  G   +ITI NDKGRLS E+IE M++                  KN LE+Y YN+RNT  + +   KL+ ADK+ +EK + E IEWLD N                   NPI+ K+Y   GGA G +P
Sbjct:  479 DANAILNVSAAEKGTGKSEKITIRNDKGRLSSEQIEEMLKQAEQFAEEDKQALERTQAKNGLESYIYNVRNTTNEPQLKDKLEAADKEALEKIVKEGIEWLDSNTTASTDELKDKQKEIEEQVNPIMTKIYSAAGGAPGGMP 620          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21
Identity = 59/140 (42.14%), Postives = 76/140 (54.29%), Query Frame = -1
Query:  332 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEK-FAGKLDPADKQKIEKAIDEAIEWLDGNQ-XXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGD 745
            DANGIL V+A DK  G    ITITNDKGRLSK+EIERMV+                  KNSLENYA+++RN V D+    GK+   DK+ +  A+ E +EWL+ N                  +  PI +K+Y+GG  GD
Sbjct:  511 DANGILRVTAHDKGTGKSETITITNDKGRLSKDEIERMVEEAERFAEEDALIRETIEAKNSLENYAHSLRNQVADKSGLGGKISADDKEALNDAVTETLEWLEANSVSATKEDFEEKKEALSAIAYPITSKIYEGGEGGD 650          
The following BLAST results are available for this feature:
BLAST of CN188339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
GRP78_MESAU1.397e-2242.5578 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN1.397e-2242.5578 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_BOVIN1.397e-2242.5578 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
GRP78_MOUSE1.825e-2242.9678 kDa glucose-regulated protein OS=Mus musculus G... [more]
HSP70_PLAFA2.383e-2240.14Heat shock 70 kDa protein OS=Plasmodium falciparum... [more]
HSP70_AJECA2.383e-2242.25Heat shock 70 kDa protein OS=Ajellomyces capsulata... [more]
HSP74_PARLI4.065e-2238.35Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
BIP2_DICDI4.065e-2242.55Luminal-binding protein 2 OS=Dictyostelium discoid... [more]
HSP72_USTMA1.183e-2140.85Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
GRP78_YARLI2.635e-2142.1478 kDa glucose-regulated protein homolog OS=Yarrow... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188339 ID=CN188339; Name=CN188339; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTAGAGCTCAAATTTTTATTGTAATTTGATATTCA
AGTAAACTATAGGTACATAGCAGAGCATTCAGACAACTATAGATTACATC
ACTATAGTAACATGAGTAACCCCTCAAACCTAATGTATATCATACACAGG
TATTCGCCCTCGAGCATCAGCAAAAACGGAGCCACAACAGATGAGTCCCA
AAACAGAGCACTCTATGACTCTCATTCATGCCTTAGTCAACTTCCTCAAT
CTTAGGTCCGCCACCTGCACCGCCAGTCTCTGCCTTGCCATGGCCGCCTC
CCGGCATCTCGGCACCACCACCCATCGGTACGTCCCCACTAGCCCCGCCT
TGATACATCTTTGCAATAATTGGGTTGCACAAGCCTTCCAACTCCTTCAA
CTTGTCCTCCAATTCATCAACCTCAGCCAATTGGTTCCCATCAAGCCACT
CAATAGCCTCATCAATGGCCTTCTCTATCTTCTGCTTGTCAGCCGGGTCT
AGTTTTCCCGCAAACTTCTCATCTCTCACAGTGTTCCTCATGTTATAAGC
ATAATTCTCCAATGAGTTCTTGGCCTCTACTTTCTTCTTTACCTCTTCAT
CCTCTGCCTTGTACTTCTCTGCCTCTTGCACCATTCTCTCAATTTCCTCC
TTGCTCAATCTTCCCTTATCGTTGGTGATTGTAATCTGGTTCTTCACTCC
AGCAGTCTTATCTTCTGCGGAGACATGCAATATACCATTAGCATC
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