CN188339

Overview
NameCN188339
Unique NameCN188339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP71_PICAN (Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            DANGIL+VSA +K  G   +ITITNDKGRLSKEEI+RMV                   KN LE+YAY+++ T  +++F  K+D + ++ + KAI+E I WLD NQ                + N  +  +Y   A+G VP
Sbjct:  481 DANGILNVSAVEKGTGKSQKITITNDKGRLSKEEIDRMVAEAEKYKEEDEKEAARIAAKNGLESYAYSLKQTASEKQFEEKVDASKRESLNKAIEETISWLDNNQSATTDEYEDKRKELEGIANDALKDLY---AAGGVP 617          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 58/139 (41.73%), Postives = 77/139 (55.40%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMY--QGGASG 745
            DANGI++VSA +K  G  N+ITITNDKGRLSKE+IERM+                   KN LE+YAY+++NT+ + +   ++   DK+K+   IDE I WLD NQ                + NPII+  Y   GGA G
Sbjct:  479 DANGIMNVSAVEKGTGKTNKITITNDKGRLSKEDIERMLADAEKYKAEDEAEAARIQAKNGLESYAYSLKNTISEGQL--QISEDDKKKVSDKIDEVISWLDNNQTAEKDEYESQQKELEGVANPIISAAYAAAGGAPG 615          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_SCHJA (Heat shock 70 kDa protein (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 58/141 (41.13%), Postives = 76/141 (53.90%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPAD-KQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            DANGIL+VSA DK  G +N+ITITNDKGRLSKEEI+RM+                   KNSLE+Y Y+M+ +V  ++   K+  +D K +I    +E I W+D NQ                +C PII  M + G  G VP
Sbjct:   36 DANGILNVSAVDKATGKENKITITNDKGRLSKEEIDRMINEADRYKSEDEKQKNRICAKNSLESYVYSMKQSVEGDEMKDKISESDRKNRILSKCEETIRWMDNNQLAEKEEFEEKKSELEKVCMPIITAMNRAG--GGVP 174          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP72_YEAST (Heat shock protein SSA2 OS=Saccharomyces cerevisiae GN=SSA2 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 55/136 (40.44%), Postives = 75/136 (55.15%), Query Frame = -1
Query:  338 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGAS 745
            D+NGIL+VSA +K  G  N+ITITNDKGRLSKE+IE+MV                   KN LE+ AY+++NT+ +     KL+ ADK  + K  +E I WLD N                 + NPI++K+YQ G +
Sbjct:  478 DSNGILNVSAVEKGTGKSNKITITNDKGRLSKEDIEKMVAEAEKFKEEDEKESQRIASKNQLESIAYSLKNTISEA--GDKLEQADKDAVTKKAEETIAWLDSNTTATKEEFDDQLKELQEVANPIMSKLYQAGGA 611          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 59/134 (44.03%), Postives = 72/134 (53.73%), Query Frame = -1
Query:  344 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGG 745
            DANGIL+VSA DK  G +N+ITITNDKGRLSKEEIERMV                   KNSLE+Y Y M+  V  E    K+  +D+Q I    ++ I WLD +Q                +C PII K+YQ G
Sbjct:  479 DANGILNVSAVDKGTGKQNKITITNDKGRLSKEEIERMVADADKYKAEDEKQRDRVSAKNSLESYVYTMKQQVEGE-LKEKIPESDRQVIISKCEDTISWLDVHQSAEKHEYESKREELEKVCAPIITKVYQAG 611          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  347 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG 745
            D+NGIL+V+AEDKT     +ITITNDKGRLS ++I +MV+                  KN+LENY ++++N++ D+K   KL  +DK  IE   +  ++WL+ NQ                + NPI++K YQG
Sbjct:  482 DSNGILNVTAEDKTTKKVEKITITNDKGRLSLKDITKMVEDAEKFKEQDQQQKERIESKNNLENYIFSVKNSINDQKIISKLSKSDKNIIESETESTLKWLESNQSAEKDEFNQKISDLESIVNPILSKFYQG 614          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  431 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQ 745
            D NGIL V+AEDK  G KN+ITITND+ RL+ EEIERMV                   +N LE+YAY ++N + D EK  GKL   DK+ +EKA++E IEWL+ +Q
Sbjct:  148 DVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYCLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQ 253          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP73_PLAFA (Heat shock 70 kDa protein PPF203 (Fragment) OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 48/105 (45.71%), Postives = 66/105 (62.86%), Query Frame = -1
Query:  431 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQ 745
            DANGIL+V+A DK  G +NQITITNDKGRLSK++I+RMV                   +N+LENY YN++NT++DE    K+   D +K  K +   ++WL+ NQ
Sbjct:   81 DANGILNVTALDKGTGKQNQITITNDKGRLSKDDIDRMVNDAEKYKEEDEQNKNRIEARNNLENYCYNVKNTLQDENLKTKIPKDDSEKCMKTVKSVLDWLEKNQ 185          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_ALTAL (Heat shock 70 kDa protein (Fragment) OS=Alternaria alternata GN=HSP70 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  326 NQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 691
            N+I ITNDKGRLSKEEIERM+                   KN+LE+YAY++RNT+ D K   KLD  DKQK+   ID+ ++WLD NQ                + NPI+ K Y  G  G +P
Sbjct:    3 NKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAEAARISAKNALESYAYSLRNTLSDSKVDEKLDAGDKQKLTAEIDKTVQWLDDNQTATKDEYESQQKELEGVANPIMMKFYGAGGEGGMP 124          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFA (78 kDa glucose-regulated protein homolog (Fragment) OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 57/139 (41.01%), Postives = 73/139 (52.52%), Query Frame = -1
Query:  338 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMY--QGGAS 745
            D NGILHV AEDK  G    ITITNDKGRLSKE+IE+M+                   KN+L+NY  +M+ TV D +K A K++  DK  I  A+ +A +WL+ N                 +C PII K+Y   GG S
Sbjct:  127 DKNGILHVEAEDKGTGKSRGITITNDKGRLSKEQIEKMINDAEKFADEDKNLREKVEAKNNLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLYGQPGGPS 265          
The following BLAST results are available for this feature:
BLAST of CN188339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
HSP71_PICAN2.230e-2040.00Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 ... [more]
HSP70_EMENI2.230e-2041.73Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP70_SCHJA2.913e-2041.13Heat shock 70 kDa protein (Fragment) OS=Schistosom... [more]
HSP72_YEAST3.804e-2040.44Heat shock protein SSA2 OS=Saccharomyces cerevisia... [more]
HSP70_SCHMA3.804e-2044.03Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HS7C3_DICDI3.804e-2038.35Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
GRP78_PIG3.804e-2049.0678 kDa glucose-regulated protein (Fragment) OS=Sus... [more]
HSP73_PLAFA6.489e-2045.71Heat shock 70 kDa protein PPF203 (Fragment) OS=Pla... [more]
HSP70_ALTAL8.475e-2042.62Heat shock 70 kDa protein (Fragment) OS=Alternaria... [more]
GRP78_PLAFA1.446e-1941.0178 kDa glucose-regulated protein homolog (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188339 ID=CN188339; Name=CN188339; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTAGAGCTCAAATTTTTATTGTAATTTGATATTCA
AGTAAACTATAGGTACATAGCAGAGCATTCAGACAACTATAGATTACATC
ACTATAGTAACATGAGTAACCCCTCAAACCTAATGTATATCATACACAGG
TATTCGCCCTCGAGCATCAGCAAAAACGGAGCCACAACAGATGAGTCCCA
AAACAGAGCACTCTATGACTCTCATTCATGCCTTAGTCAACTTCCTCAAT
CTTAGGTCCGCCACCTGCACCGCCAGTCTCTGCCTTGCCATGGCCGCCTC
CCGGCATCTCGGCACCACCACCCATCGGTACGTCCCCACTAGCCCCGCCT
TGATACATCTTTGCAATAATTGGGTTGCACAAGCCTTCCAACTCCTTCAA
CTTGTCCTCCAATTCATCAACCTCAGCCAATTGGTTCCCATCAAGCCACT
CAATAGCCTCATCAATGGCCTTCTCTATCTTCTGCTTGTCAGCCGGGTCT
AGTTTTCCCGCAAACTTCTCATCTCTCACAGTGTTCCTCATGTTATAAGC
ATAATTCTCCAATGAGTTCTTGGCCTCTACTTTCTTCTTTACCTCTTCAT
CCTCTGCCTTGTACTTCTCTGCCTCTTGCACCATTCTCTCAATTTCCTCC
TTGCTCAATCTTCCCTTATCGTTGGTGATTGTAATCTGGTTCTTCACTCC
AGCAGTCTTATCTTCTGCGGAGACATGCAATATACCATTAGCATC
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