CN188339

Overview
NameCN188339
Unique NameCN188339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2560 contig Csv1_Contig2560:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.720e-26
Identity = 65/140 (46.43%), Postives = 85/140 (60.71%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQ--GGASG 745
            DANGIL+V AEDK  G   +ITITN+KGRLS+EEI+RMV+                  +N LE Y YNM+NTV D +K A KL+  +K+K+E+A+ EA+EWLD NQ                +CNPI++ +YQ  GGA G
Sbjct:  510 DANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQRSGGAPG 649          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.553e-26
Identity = 71/172 (41.28%), Postives = 90/172 (52.33%), Query Frame = -1
Query:  236 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQ--GGASGDVPMXXXXXXXXXXXXXXXXXXXXXGPKIEEVD 745
            DANGIL+VSA +K+   +N+ITITNDKGRLSKEEIERMV                   KN+LE+Y +NM++T+ DEK   K+  +DKQ I    ++ I+WLD NQ                +CNPII K+YQ  GG  G +P                      GP IEEVD
Sbjct:  481 DANGILNVSAVEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDEKQKETIQAKNALESYCFNMKSTMEDEKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKLYQGAGGMPGGMPGGMPGFPGGAPGAGGAAPGGGAGPTIEEVD 652          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.553e-26
Identity = 66/138 (47.83%), Postives = 81/138 (58.70%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG-GASG 745
            DANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                  KN+LE+YA+NM++ V DE   GK+  ADK+K+     E I WLD N                 +CNPII+ +YQG GA G
Sbjct:  481 DANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDSNTLAEKEEFVHKREELERVCNPIISGLYQGAGAPG 618          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.553e-26
Identity = 62/134 (46.27%), Postives = 80/134 (59.70%), Query Frame = -1
Query:  344 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGG 745
            DANGIL+VSA DK+ G +N+ITITNDKGRLSKE+IERMVQ                  KNSLE+YA+NM+++V D+   GK+   DK+K+    D+ I WL+ NQ                +C PII K+YQ G
Sbjct:  483 DANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQDADKYKAEDDAQREKIAAKNSLESYAFNMKSSVEDDNMKGKISQEDKKKVVDRCDQTISWLENNQLGDKEEYEHQLKELEKVCQPIITKLYQQG 616          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26
Identity = 64/134 (47.76%), Postives = 78/134 (58.21%), Query Frame = -1
Query:  344 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGG 745
            DANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                  KN+LE+YA NM++ V DE   GK+  ADK+K+     E I WLD N                 +CNPII+ +YQGG
Sbjct:  478 DANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYALNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGG 611          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26
Identity = 63/137 (45.99%), Postives = 81/137 (59.12%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASG 745
            DANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                  KN+LE+YA+NM++ V DE    K+  +DK+KI    +E + WL+ NQ                +CNPII K+YQ G +G
Sbjct:  483 DANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCNEVLSWLEANQLAEKDEFDHKRKELENMCNPIITKLYQSGCTG 619          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.060e-26
Identity = 66/140 (47.14%), Postives = 81/140 (57.86%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            DANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                  KN+LE+YA+NM++ V DE   GK+  ADK+K+     E I WLD N                 +CNPII+ +YQ GA G  P
Sbjct:  481 DANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ-GAGGPGP 619          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 117.857 bits (294), Expect = 6.060e-26
Identity = 66/140 (47.14%), Postives = 81/140 (57.86%), Query Frame = -1
Query:  326 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVP 745
            DANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                  KN+LE+YA+NM++ V DE   GK+  ADK+K+     E I WLD N                 +CNPII+ +YQ GA G  P
Sbjct:  481 DANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ-GAGGPGP 619          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.060e-26
Identity = 63/137 (45.99%), Postives = 80/137 (58.39%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASG 745
            DANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                  KN+LE+YA+NM++ V DE    K+  +DK+KI     E + WL+ NQ                +CNPII K+YQ G +G
Sbjct:  483 DANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITKLYQSGCTG 619          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.060e-26
Identity = 66/141 (46.81%), Postives = 81/141 (57.45%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG----GASG 745
            DANGIL+V+A DK+ G  N+ITITNDKGRLSKEEIERMVQ                  KN+LE+YA+NM++ V DE   GK+  ADK+K+     E I WLD N                 +CNPII+ +YQG    GA G
Sbjct:  481 DANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEIQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGGPGAGG 621          
The following BLAST results are available for this feature:
BLAST of CN188339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
BIP2_MAIZE2.720e-2646.43Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP7D_MANSE3.553e-2641.28Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP71_RAT3.553e-2647.83Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_ONCTS3.553e-2646.27Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HSP71_CERAE4.640e-2647.76Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HS71L_MOUSE4.640e-2645.99Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP71_PONAB6.060e-2647.14Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]
HSP71_HUMAN6.060e-2647.14Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
HS71L_RAT6.060e-2645.99Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71B_PIG6.060e-2646.81Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188339 ID=CN188339; Name=CN188339; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTAGAGCTCAAATTTTTATTGTAATTTGATATTCA
AGTAAACTATAGGTACATAGCAGAGCATTCAGACAACTATAGATTACATC
ACTATAGTAACATGAGTAACCCCTCAAACCTAATGTATATCATACACAGG
TATTCGCCCTCGAGCATCAGCAAAAACGGAGCCACAACAGATGAGTCCCA
AAACAGAGCACTCTATGACTCTCATTCATGCCTTAGTCAACTTCCTCAAT
CTTAGGTCCGCCACCTGCACCGCCAGTCTCTGCCTTGCCATGGCCGCCTC
CCGGCATCTCGGCACCACCACCCATCGGTACGTCCCCACTAGCCCCGCCT
TGATACATCTTTGCAATAATTGGGTTGCACAAGCCTTCCAACTCCTTCAA
CTTGTCCTCCAATTCATCAACCTCAGCCAATTGGTTCCCATCAAGCCACT
CAATAGCCTCATCAATGGCCTTCTCTATCTTCTGCTTGTCAGCCGGGTCT
AGTTTTCCCGCAAACTTCTCATCTCTCACAGTGTTCCTCATGTTATAAGC
ATAATTCTCCAATGAGTTCTTGGCCTCTACTTTCTTCTTTACCTCTTCAT
CCTCTGCCTTGTACTTCTCTGCCTCTTGCACCATTCTCTCAATTTCCTCC
TTGCTCAATCTTCCCTTATCGTTGGTGATTGTAATCTGGTTCTTCACTCC
AGCAGTCTTATCTTCTGCGGAGACATGCAATATACCATTAGCATC
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