CN188337

Overview
NameCN188337
Unique NameCN188337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_ASPCL (Protein transport protein sec13 OS=Aspergillus clavatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.659e-26
Identity = 68/149 (45.64%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S+SWAPA APG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  148 SISWAPAAAPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPESKTYNITQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 294          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_ASPOR (Protein transport protein sec13 OS=Aspergillus oryzae GN=sec13 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.473e-26
Identity = 66/149 (44.30%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S+SWAPA +PG+L+        Q+   + G DN +K+W   +     +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT       QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  147 SISWAPAASPGSLISANPGPGQQRRFVTGGSDNLLKIWDYNSETKSYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDVSNPGQWASQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 293          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S+SWAPA APG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F + +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  162 SISWAPAAAPGSLISANPGPGQQRRFVTGGSDNLLKIWDYNPETKTYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDSVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 308          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 68/149 (45.64%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S+SWAPA APG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  161 SISWAPAAAPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPETKTYNNTQTLEGHSDWVRDVAWSPSV-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 307          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_ASPFU (Protein transport protein sec13 OS=Aspergillus fumigatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S+SWAPA +PG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  159 SISWAPAASPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPESKTYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 305          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.724e-25
Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            + SWAP   P         D  ++  S GCDN VK+W+  +         A Q HSDWVR VAW+P+  L KS IA+ASQD TV+IWT   +  +WE + L   K P   W  SWSL+GN+LA++  +N VTLWKE + G+W+    V+
Sbjct:  150 AASWAPISLP---------DNTRRFVSGGCDNLVKIWRYDDAAKTFIEEEAFQGHSDWVRDVAWSPSR-LSKSYIATASQDRTVLIWTKDGKSNKWEKQPLTKEKFPDVCWRASWSLSGNVLAISGGDNKVTLWKENIQGKWESAGEVD 288          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLGLLDPV---QKLASCGCDNTVKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            SVSWAPA  PG++V           ++  + G DN +K+W      G +K++  P L  H+DWVR VAW+P + L KS IASAS+D TV IWT      +QW  +VL  F   VW VSWSL+GN+LA +  +N VTLWKE + GEW+ V  +E
Sbjct:  140 SVSWAPATNPGSIVSSKPSPKSTGNRRFVTGGSDNALKIWAFDAATGAYKLEREP-LTGHTDWVRDVAWSPTV-LQKSYIASASEDRTVRIWTSDPANPQQWNCKVL-GFDAAVWRVSWSLSGNVLAASGGDNKVTLWKENLKGEWECVKSIE 289          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 64/151 (42.38%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVG--LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            S SWAP  A  +        L   ++  +CG DN VK+WK    +        L+ H+DWVR VAW+P+  L +  IA+ASQD TV+IWT  K+G+ W+ + L + K P   W  SWSL+GN+LAV+  +N VTLWKE + G+W+    VE
Sbjct:  153 SASWAPFTAASSTSSKDANTLKQHRRFVTCGSDNLVKIWKYDTALETYAEEAKLEGHTDWVRDVAWSPS-NLVRPYIATASQDCTVLIWTQDKDGK-WQSQPLTEEKFPDVCWRCSWSLSGNILAVSGGDNKVTLWKENLQGKWESAGEVE 301          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 63/149 (42.28%), Postives = 90/149 (60.40%), Query Frame = -2
Query:  296 SVSWAPAMAPGALVGLG-LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 733
            SVSWAPA APG+++        +++  + G DN VK+W              L+ H+ WVR V+W+P++ L +S IASASQD TV IWT       +W    L +F   VW VSWSL+GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  157 SVSWAPAAAPGSVISATPSTGQIRRFVTGGSDNLVKIWDYNPETKTYATSHVLEGHTGWVRDVSWSPSI-LSRSYIASASQDKTVRIWTSDPSNPNEWTSHQL-EFDAVVWRVSWSLSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 303          
BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 65/144 (45.14%), Postives = 87/144 (60.42%), Query Frame = -2
Query:  314 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE-QWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 733
            +V W+P    G++VG       +KLA+ GCDN VK+W    G+        L  H DW R VAWAP++GL K+ +ASASQD  V IWT  KEG+  W+   L + K P   W VSWSL+GN+LAV+  +N V L+KE+   +WQ
Sbjct:  150 AVCWSPPSLSGSVVGQSPAAGPKKLATAGCDNLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWT--KEGDGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSCGDNKVYLFKES-QNKWQ 290          
The following BLAST results are available for this feature:
BLAST of CN188337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_ASPCL2.659e-2645.64Protein transport protein sec13 OS=Aspergillus cla... [more]
SEC13_ASPOR3.473e-2644.30Protein transport protein sec13 OS=Aspergillus ory... [more]
SEC13_ASPTN4.536e-2644.97Protein transport protein sec13 OS=Aspergillus ter... [more]
SEC13_ASPNC4.536e-2645.64Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_ASPFU5.924e-2644.97Protein transport protein sec13 OS=Aspergillus fum... [more]
SEC13_PICPG1.724e-2542.95Protein transport protein SEC13 OS=Pichia pastoris... [more]
SEC13_CHAGB2.940e-2545.75Protein transport protein SEC13 OS=Chaetomium glob... [more]
SEC13_LODEL1.459e-2442.38Protein transport protein SEC13 OS=Lodderomyces el... [more]
SEC13_COCIM1.459e-2442.28Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_SCHPO1.906e-2445.14Protein transport protein sec13 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188337 ID=CN188337; Name=CN188337; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTCGGATAAAGAGTTCATATGTAATTTAACAGAAA
TATTGGCAGTCACAAATACAGACATATGGATATGGAGATTAAGACACCAT
CATTTGTTTCTGAATCTGGCAAGAAAGAATAACAACTAACCAAATACAAA
TTAAGTATTCCAACAAAATCAATCCAACCAAAAAAAAAGGAAAAAAAAAA
ACTAAACCAGGTGTAAGAAAGGCTACTTCCAATAAGTCCAAAAAAGAACA
CAATGATTGTGAAAGGGTAAGTAGGAAGACACCTTATGTCTGTGGCTCAA
CTACACTCACTTGTTGCCACTCACCATCAACAGCTTCCTTCCACAATGTC
ACATTATTTGCATCAGCCACAGCCAACAAATTTCCAGTCAGTGACCACGA
AACACTCCAAACTGGTGTCTTAAAATCCTTCAAAACTCGACCCTCCCATT
GCTCCCCTTCCTTGGCACAGGTCCAAATAACAACTGTCCCATCCTGTGAT
GCACTTGCAATTGTGGATTTTGGAAGACCCAAGTTGGGAGCCCACGCCAC
GCTCCGCACCCAATCACTGTGCATCTGAAGGGCAGGGAAGCAATCCATCT
TCCAAATCCCATTATACATCTTCCACACCTTTACAGTATTATCACAACCA
CAAGAAGCCAATTTCTGAACAGGATCCAGTAAGCCCAATCCAACTAAAGC
ACCAGGAGCCATTGCCGGGGCCCATGAAACAGATGTT
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