CN188337

Overview
NameCN188337
Unique NameCN188337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188337 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 55/147 (37.41%), Postives = 83/147 (56.46%), Query Frame = -2 
Query:  308 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC--AKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV 733
            S+SWAP M   +         V++  S G DN VK+WK  +          L+ H D V +V W+P   L +S +AS S D   ++WT   + +   W+   + +  F+  + SVSWSL+GNLLAV+D + NVT+WKE+ DG+W++V
Sbjct:  156 SISWAPLMKTDSSDDGDETTAVKQFISGGNDNLVKIWKFDDDQETYVVADTLEGHKDAVTAVDWSPTT-LLQSYVASVSNDKQCLVWTQDHSSKKNDWKKISVNEGKFEQKLGSVSWSLSGNLLAVSDDDKNVTIWKESGDGKWEEV 301
The following BLAST results are available for this feature:
BLAST of CN188337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SC132_CANGA2.256e-1737.41Protein transport protein SEC13-2 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188337 ID=CN188337; Name=CN188337; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTCGGATAAAGAGTTCATATGTAATTTAACAGAAA
TATTGGCAGTCACAAATACAGACATATGGATATGGAGATTAAGACACCAT
CATTTGTTTCTGAATCTGGCAAGAAAGAATAACAACTAACCAAATACAAA
TTAAGTATTCCAACAAAATCAATCCAACCAAAAAAAAAGGAAAAAAAAAA
ACTAAACCAGGTGTAAGAAAGGCTACTTCCAATAAGTCCAAAAAAGAACA
CAATGATTGTGAAAGGGTAAGTAGGAAGACACCTTATGTCTGTGGCTCAA
CTACACTCACTTGTTGCCACTCACCATCAACAGCTTCCTTCCACAATGTC
ACATTATTTGCATCAGCCACAGCCAACAAATTTCCAGTCAGTGACCACGA
AACACTCCAAACTGGTGTCTTAAAATCCTTCAAAACTCGACCCTCCCATT
GCTCCCCTTCCTTGGCACAGGTCCAAATAACAACTGTCCCATCCTGTGAT
GCACTTGCAATTGTGGATTTTGGAAGACCCAAGTTGGGAGCCCACGCCAC
GCTCCGCACCCAATCACTGTGCATCTGAAGGGCAGGGAAGCAATCCATCT
TCCAAATCCCATTATACATCTTCCACACCTTTACAGTATTATCACAACCA
CAAGAAGCCAATTTCTGAACAGGATCCAGTAAGCCCAATCCAACTAAAGC
ACCAGGAGCCATTGCCGGGGCCCATGAAACAGATGTT
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