CN188334

Overview
NameCN188334
Unique NameCN188334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            A+GID+GT+   +  +   +VE+I N +  +   SYV F D     G + +  ++  M     IF+ KRLIGR   D  V +  K  PF V + D   +P I     +  ++  PEE+ ++ L +++  AE  L + + N V+T+P  F+  Q
Sbjct:    6 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAK--NQVAMNPTQTIFDAKRLIGRKFDDAAVQSDMKHWPFEVVSAD--GKPKIEVTYKDEKKTFFPEEISSMVLTKMKETAEAYLGKTVTNAVITVPAYFNDSQ 154          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDP-VVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            A+GID+GT+   +A ++   VE+I N +  +   SYV F D     G + +  ++  +     +F+ KRLIGR   DP V   +K  PF V + D   +P +        ++ TPEE+ ++ L +++  AE  L   + + V+T+P  F+  Q
Sbjct:    4 AVGIDLGTTYSCVAHFSNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAK--NQAAINPHNTVFDAKRLIGRKFDDPEVTTDAKHFPFKVISRD--GKPVVQVEYKGETKTFTPEEISSMVLSKMKETAENYLGTTVNDAVVTVPAYFNDSQ 152          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 46/153 (30.07%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            A+GID+GT+   +  +    +E+I N +  +   S+V F D     G + +  ++  M     +F+ KRLIGR   D  V A  K  PF V  V+   +P +        +  TPEE+ ++ L ++R  AE  L   + N V+T+P  F+  Q
Sbjct:    4 AVGIDLGTTYSCVGIFRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDAAK--NQVAMNPINTVFDAKRLIGRKFNDAEVQADMKHFPFKV--VEKSGKPIVQVEFKGEEKQFTPEEISSMVLTKMRETAEAYLGGTVNNAVITVPAYFNDSQ 152          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 48/153 (31.37%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            AIGID+GT+   +  W    VE+I N +  +   SYV F D     G + +  ++  M     +F+ KRLIGR  +D  V     L PF V       +P I        +  + EE+ ++ LV++R +AE  L   ++N V+T+P  F+  Q
Sbjct:    8 AIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAK--NQVAMNPQNTVFDAKRLIGRRFSDSSVQNDMKLWPFKVGGSPCD-KPMIVVNYKGEEKKFSAEEISSMVLVKMREVAEAFLGHAVKNAVVTVPAYFNDSQ 157          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 52/180 (28.89%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  184 NTGMAEPAYTVASDTETTGEEKTSSPFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTD-PVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFS 720
            + G  + A+  A+DTE  G            IGID+GT+   +      +VE++ N +  ++  SYV F DE    G + +  ++        IF++KRLIGR  +D  V +  K  P+ V + D   +P +   V    ++ TPEE+ A+ L +++  AE  L + + + V+T+P  F+
Sbjct:   23 SAGFVQQAH--ANDTEAMGT----------VIGIDLGTTYSCVGVMQKGKVEILVNDQGNRITPSYVAFTDEERLVGDAAK--NQAAANPHRTIFDIKRLIGRKFSDKDVQNDIKHFPYKVVSKD--DKPVVKVEVKGEEKTFTPEEISAMILGKMKETAEGYLGKKVTHAVVTVPAYFN 186          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 46/154 (29.87%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  277 IGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE--VPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            IGID+GT+   +A     + E++ N +  ++  SYV F D+  +       Q+++  +      IF++KRLIG    D  V    K LPF  + VD    P +A  V    +  TPEE+  + L +++ +AE  L + + + V+T+P  F+  Q
Sbjct:   50 IGIDLGTTYSCVALMRNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVANNPK----NTIFDIKRLIGLKYNDKTVQREIKHLPF--EVVDKNGMPAVAVTVKGERKLFTPEEISGMVLGKMKQIAEEYLGKKVTHAVVTVPAYFNDAQ 197          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 46/153 (30.07%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            AIGID+GT+   +  +    +E+I N +  +   S+V F D     G S +  ++  +     +F+ KRLIGR   D  V A  K  PF V  ++   +P          +  TPEE+ ++ L ++R  AE+ L   + N V+T+P  F+  Q
Sbjct:    4 AIGIDLGTTYSCVGIYRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDSAK--NQVAINPHNTVFDAKRLIGRKFQDAEVQADMKHFPFKV--IEKAGKPVTQVEFKGETKDFTPEEISSMILTKMRETAESYLGGTVNNAVITVPAYFNDSQ 152          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            A+GID+GT+   +  W    VE+I N +  +   SYV F D     G + +  ++  M     +F+ KRLIGR   D VV A  K   F V  V+   +P          ++ TPEE  ++ L +++  AE  L   + + V+T+P  F+  Q
Sbjct:    9 AVGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAK--NQVAMNPHNTVFDAKRLIGRRFDDDVVQADMKHWSFTV--VNKNSKPLFQVEFKGETKTFTPEEFSSMILTKMKETAEAYLGTKVNHAVVTVPAYFNDSQ 157          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 44/152 (28.95%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  277 IGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGR-VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            IGID+GT+   +  +   +VE+I N +  ++  SYV F +     G + +  ++  +     IF++KRLIGR  D + V    K LP+ +  V    +P++   V    ++ +PEE+ A+ L  ++ +AE  L + + + V+T P  F+  Q
Sbjct:   35 IGIDLGTTYSCVGVFKKGKVEIIPNDQGNRITPSYVAFTETERLIGEAAK--NQATLNPENTIFDIKRLIGRRFDDEEVQRDMKLLPYKI--VSKNNKPYVVVKVKGEEKTYSPEEISAMILGRMKEIAEASLGKTVTHAVVTCPAYFNDAQ 182          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            AIGID+GT+   +  W  S+VE+I N +  +   SYV F +      +     ++  M +   +F+ KRLIGR   D  +     L PF V  ++   +P I        +   PEE+ ++ L ++R +AE  L   +++ V+T+P  F+  Q
Sbjct:    6 AIGIDLGTTYSCVGVWQNSKVEIIANDQGNRTTPSYVAFNETERL--IGDPAKNQVAMNAKNTVFDAKRLIGRKFDDKKIQEDLKLWPFKV--INEKGKPKIEVEFKGERKRFAPEEISSMVLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQ 154          
The following BLAST results are available for this feature:
BLAST of CN188334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
HSP7D_DROME1.143e-1130.72Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP73_YEAST1.143e-1130.07Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP70_TRIRU1.143e-1130.07Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]
HSP70_SOYBN1.143e-1131.37Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
GRP78_NEUCR1.143e-1128.8978 kDa glucose-regulated protein homolog OS=Neuros... [more]
GRP78_ASHGO1.143e-1129.8778 kDa glucose-regulated protein homolog OS=Ashbya... [more]
HSP70_CLAHE1.492e-1130.07Heat shock 70 kDa protein OS=Cladosporium herbarum... [more]
HSP70_BLAEM1.492e-1130.72Heat shock 70 kDa protein OS=Blastocladiella emers... [more]
BIP2_DICDI1.492e-1128.95Luminal-binding protein 2 OS=Dictyostelium discoid... [more]
HSP7B_DROME1.949e-1129.41Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005N21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188334 ID=CN188334; Name=CN188334; organism=Citrus sinensis; type=EST; length=757bp
AGTAGAACCCGCCTTTTCGTAGAAGTACTAGTTGATAATAATACACATAA
CGAAGTGCTCTCGTTTCGCTTAAAACTGAAAAGCTCTGGCAGTTTCCATT
CCAAGGCTCGATTGCTACTCTTCAGCTTTCTTTGCTTTCTGCTCGCTTTC
TCTAAACAATCTCTAACATTGCAAATCTGTAAAAACACAGGAATGGCTGA
ACCAGCGTACACTGTGGCTTCTGATACTGAAACAACAGGAGAAGAAAAGA
CCTCATCCCCTTTTCCTGAAATTGCAATTGGAATTGACATAGGTACTTCA
CAATGCAGTATTGCATTCTGGAATGGCTCTGAAGTAGAGCTTATTAAGAA
CACAAGAAACCAGAAGGTGATGCGTTCATATGTCACCTTCAAGGATGAAG
TTCCTGCAGGTGGAGTCAGCACTCAACTCTCCCATGAACATGAAATGTTA
TCTGGAGCTGCTATTTTCAACATGAAACGCTTAATCGGCAGAGTTGACAC
CGATCCTGTGGTCCATGCAAGCAAAAGCTTACCGTTTTTGGTCCAAACCG
TGGACATTGGTGTTCGTCCATTTATTGCAGCCTTAGTGAACAATGCGTGG
AGATCCACCACTCCCGAAGAAGTCCTGGCAATATTTTTGGTGGAACTAAG
AGCCATGGCTGAAACTCAGTTGAAACGCCCAATAAGAAATGTTGTTCTAA
CCATTCCAGTTTCATTCAGTCGTTTCCAACTGACACGCATTGAACGAGCA
TGTGCTA
back to top