CN188334

Overview
NameCN188334
Unique NameCN188334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 48/153 (31.37%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            AIGID+GT+   +  W    VE+I N +  +   SYV F D     G + +  ++  M     +F+ KRLIGR  TD  V +  K  PF +++     +P I        +  + EE+ ++ L+++R +AE  L   I+N V+T+P  F+  Q
Sbjct:    9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAK--NQVAMNPINTVFDAKRLIGRRFTDSSVQSDIKLWPFTLKS-GPAEKPMIVVNYKGEDKEFSAEEISSMILIKMREIAEAYLGTTIKNAVVTVPAYFNDSQ 158          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  274 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPF-IAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            ++GID+GT+   +  W    VE+I N +  +   SYV F D     G + +  ++  M +   +F+ K LIGR  +DP+V A  K  PF + +   G R   I        ++  PEE+ ++ L+++R +AE  + + ++N V+T+P  F+  Q
Sbjct:    9 SVGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAK--NQVAMNAHNTVFDAKPLIGRKFSDPIVQADIKHWPFKLTS---GWRQAQIVVQFKGESKTFQPEEISSMVLIKMREVAEAFIGKEVKNAVITVPAYFNDSQ 157          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  271 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            +AIGID+GT+   +  +   +VE+I N +  +   SYV F D     G + +  ++  M     +F+ KRLIGR   DPVV +   L PF  Q ++   +P +        ++  PEE+ ++ L +++  AE  L   + N V+T+P  F+  Q
Sbjct:    7 MAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAK--NQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPF--QVINEAGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHNVTNAVITVPAYFNDSQ 156          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  271 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            +AIGID+GT+   +  +   +VE+I N +  +   S V F D     G + +  ++  +     +F+ KRLIGR   DPVV    K  PF V  ++ G +P +        +   PEE+ ++ L +++ +AE  L  P+ N V+T+P  F+  Q
Sbjct:    5 VAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSSVAFTDTERLIGDAAK--NQVALNPQNTVFDAKRLIGRKFGDPVVQGDMKHWPFRV--INDGDKPKVQVSYKGETKGFYPEEISSMVLTKMKEIAEGYLGHPVSNAVITVPAYFNDSQ 154          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  241 EEKTSSPFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE---VPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            EE+         +GID+GT+   +  +    VE+I N +  ++  SYV F  E   +       QL+   E      +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q
Sbjct:   19 EEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPE----NTVFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQ 180          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  241 EEKTSSPFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE---VPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            EE+         +GID+GT+   +  +    VE+I N +  ++  SYV F  E   +       QL+   E      +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q
Sbjct:   19 EEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPE----NTVFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQ 180          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 48/154 (31.17%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  277 IGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAA--IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            IGID+GT+   +       VE+I N +  ++  SYV F ++    G + +    +++ S     IF++KRLIG    D V+    K LP+ V+  D   RP + A VN   ++ T EE+ A+ L +++ +AE  L + + + V+T+P  F+  Q
Sbjct:   43 IGIDLGTTYSCVGVMKAGRVEIIPNDQGNRITPSYVAFTEDERLVGDAAK----NQIASNPTNTIFDIKRLIGHRFDDKVIQKEIKHLPYKVKDQD--GRPVVEAKVNGELKTFTAEEISAMILGKMKQIAEDYLGKKVTHAVVTVPAYFNDAQ 190          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  241 EEKTSSPFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE---VPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            EE+         +GID+GT+   +  +    VE+I N +  ++  SYV F  E   +       QL+   E      +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q
Sbjct:   20 EEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPE----NTVFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQ 181          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  241 EEKTSSPFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE---VPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            EE+         +GID+GT+   +  +    VE+I N +  ++  SYV F  E   +       QL+   E      +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q
Sbjct:   19 EEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPE----NTVFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQ 180          
BLAST of CN188334 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  241 EEKTSSPFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE---VPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 729
            EE+         +GID+GT+   +  +    VE+I N +  ++  SYV F  E   +       QL+   E      +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q
Sbjct:   19 EEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPE----NTVFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQ 180          
The following BLAST results are available for this feature:
BLAST of CN188334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
HSP73_ARATH2.302e-1231.37Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_BRELC2.302e-1229.87Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HS71L_MOUSE2.302e-1230.52Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HS71A_PIG2.302e-1230.52Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
GRP78_SPETR2.302e-1230.3678 kDa glucose-regulated protein OS=Spermophilus t... [more]
GRP78_RAT2.302e-1230.3678 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_PICAN2.302e-1231.1778 kDa glucose-regulated protein homolog OS=Pichia... [more]
GRP78_MOUSE2.302e-1230.3678 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU2.302e-1230.3678 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN2.302e-1230.3678 kDa glucose-regulated protein OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188334 ID=CN188334; Name=CN188334; organism=Citrus sinensis; type=EST; length=757bp
AGTAGAACCCGCCTTTTCGTAGAAGTACTAGTTGATAATAATACACATAA
CGAAGTGCTCTCGTTTCGCTTAAAACTGAAAAGCTCTGGCAGTTTCCATT
CCAAGGCTCGATTGCTACTCTTCAGCTTTCTTTGCTTTCTGCTCGCTTTC
TCTAAACAATCTCTAACATTGCAAATCTGTAAAAACACAGGAATGGCTGA
ACCAGCGTACACTGTGGCTTCTGATACTGAAACAACAGGAGAAGAAAAGA
CCTCATCCCCTTTTCCTGAAATTGCAATTGGAATTGACATAGGTACTTCA
CAATGCAGTATTGCATTCTGGAATGGCTCTGAAGTAGAGCTTATTAAGAA
CACAAGAAACCAGAAGGTGATGCGTTCATATGTCACCTTCAAGGATGAAG
TTCCTGCAGGTGGAGTCAGCACTCAACTCTCCCATGAACATGAAATGTTA
TCTGGAGCTGCTATTTTCAACATGAAACGCTTAATCGGCAGAGTTGACAC
CGATCCTGTGGTCCATGCAAGCAAAAGCTTACCGTTTTTGGTCCAAACCG
TGGACATTGGTGTTCGTCCATTTATTGCAGCCTTAGTGAACAATGCGTGG
AGATCCACCACTCCCGAAGAAGTCCTGGCAATATTTTTGGTGGAACTAAG
AGCCATGGCTGAAACTCAGTTGAAACGCCCAATAAGAAATGTTGTTCTAA
CCATTCCAGTTTCATTCAGTCGTTTCCAACTGACACGCATTGAACGAGCA
TGTGCTA
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