CN188333

Overview
NameCN188333
Unique NameCN188333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4022 contig Csv1_Contig4022:2..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.303e-31
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  346 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.303e-31
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  346 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.404e-30
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+       EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +I RNTT+P +K+ VF+T  DNQ   LI VYEGE  + ++N+LLG F+++GIPP+P+GVP+I VC DIDA+ +L V
Sbjct:  349 IPKVQQLLVDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV 494          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.834e-30
Identity = 71/151 (47.02%), Postives = 96/151 (63.58%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEEN----HLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ +F+T  DNQ   LI VYEGE  +  +N     LLG F++TGIPP+P+GVP+INV  DIDA+ +L V
Sbjct:  348 IPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNE--RSDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTRDNKLLGKLLGKFELTGIPPAPRGVPQINVVFDIDANGILNV 496          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.395e-30
Identity = 73/161 (45.34%), Postives = 99/161 (61.49%), Query Frame = -2
Query:  266 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+ SG  D  GN+ DLL + V PL +GI   G     +I RNTT+P ++  VF+T  DNQ   LI VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V       GN + +
Sbjct:  345 IPKIQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILSG--DTSGNVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKQTQVFSTYADNQPGVLIQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGNENKI 503          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.128e-30
Identity = 63/147 (42.86%), Postives = 93/147 (63.27%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IP+++ L+       E  + INP EA   GAA++ A+ SG        ++L + V PL +GI   G     +IPRNTT+P +K  VF+T  DNQ   LI VYEGE ++ ++N+LLG F++TGIPP+P+GVP+I V  D+DA+ ++ V
Sbjct:  341 IPRIQKLISDYFNGKEPNKSINPDEAVAYGAAVQAAILSGDTSSKSTSEILLLDVAPLSLGIETAGGMMTKLIPRNTTIPTKKSEVFSTFSDNQPGVLIQVYEGERQRTKDNNLLGKFELTGIPPAPRGVPQIEVTFDVDANGIMNV 487          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.086e-30
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+ SG  D   N+ DLL + VTPL +GI   G     +I RNTT+P ++   FTT  DNQ   LI VYEGE    ++N+LLG F++TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  343 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSG--DKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 488          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.086e-30
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+ SG  D   N+ DLL + VTPL +GI   G     +I RNTT+P ++   FTT  DNQ   LI VYEGE    ++N+LLG F++TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  343 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSG--DKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 488          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.086e-30
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+ SG  D   N+ DLL + VTPL +GI   G     +I RNTT+P ++   FTT  DNQ   LI VYEGE    ++N+LLG F++TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  343 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSG--DKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 488          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.086e-30
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+ SG  D   N+ DLL + VTPL +GI   G     +I RNTT+P ++   FTT  DNQ   LI VYEGE    ++N+LLG F++TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  343 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSG--DKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 488          
The following BLAST results are available for this feature:
BLAST of CN188333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP72_CAPHI6.303e-3147.97Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN6.303e-3147.97Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP73_ARATH1.404e-3046.94Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_DAUCA1.834e-3047.02Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]
HSP71_ORYLA2.395e-3045.34Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP70_NEUCR3.128e-3042.86Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]
HSP7C_SAGOE4.086e-3047.97Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT4.086e-3047.97Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB4.086e-3047.97Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE4.086e-3047.97Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188333 ID=CN188333; Name=CN188333; organism=Citrus sinensis; type=EST; length=749bp
TTTTTNTTTTTTTTTTTCATCAAAACAGCCTCTATTATTTCTTTATGATG
CAAACTCACAAAGTAAATTTTTCTGAAGGATACAGACTCATATGCATACA
ACGCTTGAAAATATTAAAAAGCAATCAAATTTCAAGACACCATTACATTT
TCTTCGGCTGCACTGTCTCAAGGTCTAGAGTGGATCCATAAGCCCTGTTT
AGAGCTTCAGCACACCAGCCATGTCCATCATCAACCGTTGGCAGTCTCAC
TTCCATTACAGGAATCACTGGATGTGGGTTGCCAGGCATAATGACCCCAA
CCAAAACTCTCAGCACACTCGAGGCATCAATGTCCATGCACACATTTATT
TCTGGTACTCCTTTGGGAGAGGGAGGAATTCCTGTTATCTTGAAATAGCC
TAGAAGATGATTCTCTTCTACCTTCTCCCCTTCACCTTCATAAACAATAA
TCAGCGCCTCAGACTGGTTGTCGCGAACTGTTGTGAAGACCAGATCTTTC
CGTGCTGGCATCGTGGTGTTTCTAGGAATGATGGGTACAAAGTTGTTGCC
ATTAGCTCGTATACCAATGCCAAGTGGTGTGACTTGGATGGTTAACAGGT
CCAGGTTCCCAAATGGATCGTTAATGCCTGAAGTCACTGCTCCTTCCAGA
GCTGCCCCACTAACTGCTGCTTCCAATGGGTTAATACCCTCATAGAGTTC
TACTTTTTTGCATGTACTCTGGACAAGATTCCTTACTTTTGGAATATAT
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