CN188333

Overview
NameCN188333
Unique NameCN188333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.705e-29
Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ LV       EL + INP EA   GAA++ A+ +G +      D+L + V PL +GI   G     +IPRN+T+P +K   F+T  DNQ   LI V+EGE  K ++N+LLG F+++GIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  342 IPKIQKLVSDFFNGKELNKSINPDEAVAYGAAVQAAILTG-DTSSKTQDILLLDVAPLSLGIETAGGIMTKLIPRNSTIPTKKSETFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNV 487          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.705e-29
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q+     EL + INP EA   GAA++ A+ SG  D    + +L+ I V PL +GI   G     I+PRNT +P +K   F+T  DNQS  LI VYEGE    ++N+LLG F++TGIPP+P+G P+I V  D+D++ +L V
Sbjct:  344 IPKVQQLIQNLFNGKELNKSINPDEAVAYGAAVQAAILSG--DKSSRISELIFIDVAPLSLGIETVGGVMTNIVPRNTIIPCKKTQTFSTHTDNQSGVLIQVYEGERTMTKDNNLLGKFELTGIPPAPRGTPQIEVSFDVDSNGILNV 489          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.705e-29
Identity = 69/160 (43.12%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  266 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPV 745
            IPK++ LV+      E   GINP EA   GAA++  V SG  D     DL  + V PL +GI   G     +IPRNT +P +K  +F+T  DNQ    I VYEGE    ++NHLLG F +TGIPP+P+GVP+I V  +ID + +LRV       GN + +
Sbjct:  368 IPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTG---DLALLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKI 524          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.006e-28
Identity = 68/147 (46.26%), Postives = 91/147 (61.90%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+  G        DLL + VTPL +GI   G     +I RNTT+P ++   FTT  DNQ   LI V+EGE    ++N+LLG F++TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  343 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQ-DLLLLDVTPLSLGIETAGGVMTTLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 488          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP70_PENCI (Heat shock 70 kDa protein (Fragment) OS=Penicillium citrinum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.314e-28
Identity = 63/147 (42.86%), Postives = 92/147 (62.59%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ LV     K +  + INP EA   GAA++ A+ SG        ++L + V PL +GI   G    P+I RNTT+P +K   F+T  DNQ   LI V+EGE  + ++N+LLG F++TGIPP+P+GVP+I V  D+DA+ ++ V
Sbjct:  211 IPKIQKLVSDFFNK-DANKSINPDEAVAYGAAVQAAILSGDTSSKSTNEILLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSETFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQIEVTFDLDANGIMNV 356          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.314e-28
Identity = 68/161 (42.24%), Postives = 97/161 (60.25%), Query Frame = -2
Query:  266 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+ S  N+    + DLL + V PL +G+   G     +IPRNTT+P +K   F+T  DNQ   LI VYEGE    ++N+LLG F+++GIPP+P+GVP++ V  D+DA+ +L V       GN   +
Sbjct:  341 IPKVQQLLQEFFNGKELNKSINPDEAVAYGAAVQAAILS--NEGGAKVADLLLLDVAPLSMGLETAGGVMTTLIPRNTTIPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDKSTGNKQKI 499          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 68/147 (46.26%), Postives = 91/147 (61.90%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+  G        DLL + VTPL +GI   G     +I RNTT+P ++   FTT  DNQ   LI VYEGE    ++N+LLG F+++GIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  343 IPKVQRLLQDLFNGKELNKSINPDEAVAYGAAVQAAILHGDKSQEVQ-DLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNV 488          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 66/147 (44.90%), Postives = 92/147 (62.59%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ LV       E    INP EA   GAA++ A+ +G +      DLL + V PL +GI   G     +IPRN+T+P +K  VF+T  DNQ   LI V+EGE  + ++N+LLG F+++GIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  341 IPKVQKLVSDFFNGKEPNRSINPDEAVAYGAAVQAAILTG-DQSSTTQDLLLLDVAPLSLGIETAGGIMTKLIPRNSTIPTKKSEVFSTYADNQPGVLIQVFEGERTRTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNV 486          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_YEAST (Heat shock protein SSA2 OS=Saccharomyces cerevisiae GN=SSA2 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ LV       E    INP EA   GAA++ A+ +G ++     DLL + V PL +GI   G     +IPRN+T+P +K  VF+T  DNQ   LI V+EGE  K ++N+LLG F+++GIPP+P+GVP+I V  D+D++ +L V
Sbjct:  340 IPKVQKLVTDYFNGKEPNRSINPDEAVAYGAAVQAAILTG-DESSKTQDLLLLDVAPLSLGIETAGGVMTKLIPRNSTIPTKKSEVFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDVDSNGILNV 485          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ +V       E  + INP E    GAA++ A+ SG        ++L + V PL +GI   G    P+I RNTT+P +K   F+T  DNQ   LI V+EGE  + ++N+LLG F++TGIPP+P+GVP+I V  D+DA+ ++ V
Sbjct:  341 IPKIQKMVSDFFNGKEPNKSINPDEGVAYGAAVQAAILSGDTSSKSTNEILLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSETFSTFSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQIEVTFDVDANGIMNV 487          
The following BLAST results are available for this feature:
BLAST of CN188333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_CANAL7.705e-2944.22Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]
HS7C3_DICDI7.705e-2945.27Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
GRP78_PONAB7.705e-2943.1378 kDa glucose-regulated protein OS=Pongo abelii G... [more]
HSP7D_MANSE1.006e-2846.26Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP70_PENCI1.314e-2842.86Heat shock 70 kDa protein (Fragment) OS=Penicilliu... [more]
HS7C1_DICDI1.314e-2842.24Heat shock cognate 70 kDa protein 1 OS=Dictyosteli... [more]
HSP7D_DROME1.716e-2846.26Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP74_YEAST1.716e-2844.90Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP72_YEAST1.716e-2844.22Heat shock protein SSA2 OS=Saccharomyces cerevisia... [more]
HSP70_TRIRU1.716e-2841.50Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005N21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188333 ID=CN188333; Name=CN188333; organism=Citrus sinensis; type=EST; length=749bp
TTTTTNTTTTTTTTTTTCATCAAAACAGCCTCTATTATTTCTTTATGATG
CAAACTCACAAAGTAAATTTTTCTGAAGGATACAGACTCATATGCATACA
ACGCTTGAAAATATTAAAAAGCAATCAAATTTCAAGACACCATTACATTT
TCTTCGGCTGCACTGTCTCAAGGTCTAGAGTGGATCCATAAGCCCTGTTT
AGAGCTTCAGCACACCAGCCATGTCCATCATCAACCGTTGGCAGTCTCAC
TTCCATTACAGGAATCACTGGATGTGGGTTGCCAGGCATAATGACCCCAA
CCAAAACTCTCAGCACACTCGAGGCATCAATGTCCATGCACACATTTATT
TCTGGTACTCCTTTGGGAGAGGGAGGAATTCCTGTTATCTTGAAATAGCC
TAGAAGATGATTCTCTTCTACCTTCTCCCCTTCACCTTCATAAACAATAA
TCAGCGCCTCAGACTGGTTGTCGCGAACTGTTGTGAAGACCAGATCTTTC
CGTGCTGGCATCGTGGTGTTTCTAGGAATGATGGGTACAAAGTTGTTGCC
ATTAGCTCGTATACCAATGCCAAGTGGTGTGACTTGGATGGTTAACAGGT
CCAGGTTCCCAAATGGATCGTTAATGCCTGAAGTCACTGCTCCTTCCAGA
GCTGCCCCACTAACTGCTGCTTCCAATGGGTTAATACCCTCATAGAGTTC
TACTTTTTTGCATGTACTCTGGACAAGATTCCTTACTTTTGGAATATAT
back to top