CN188332

Overview
NameCN188332
Unique NameCN188332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_PSEAB (Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=mtnA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 68/186 (36.56%), Postives = 99/186 (53.23%), Query Frame = 3
Query:  144 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALH 698
            +++I +R G+L+LLDQR LP E ++LE   +A+   AIR+MVVRG               V    A      D  + L +    L  SRPTAVNL  A  ++++ + +      E +    A +EA  I + + D   N  +   G   ++ Q + S  ++LTHCNTG+LAT G+GTALGVIRA H
Sbjct:   11 VKAIEWRDGTLRLLDQRLLPQEEVWLEHESAAEVAKAIRDMVVRGAPAIGISAAYGI---VLGARARLAQGGDWRAALEEDFRLLADSRPTAVNLFWALNRMRDRLERM----KEGDQPL-AVLEAEAISIHESDREANLTMAQLGMELIRKQ-QGSPQNILTHCNTGALATGGFGTALGVIRAAH 187          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_PSEA8 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=mtnA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 68/186 (36.56%), Postives = 99/186 (53.23%), Query Frame = 3
Query:  144 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALH 698
            +++I +R G+L+LLDQR LP E ++LE   +A+   AIR+MVVRG               V    A      D  + L +    L  SRPTAVNL  A  ++++ + +      E +    A +EA  I + + D   N  +   G   ++ Q + S  ++LTHCNTG+LAT G+GTALGVIRA H
Sbjct:   11 VKAIEWRDGTLRLLDQRLLPQEEVWLEHESAAEVAKAIRDMVVRGAPAIGISAAYGI---VLGARARLAQGGDWRAALEEDFRLLADSRPTAVNLFWALNRMRDRLERM----KEGDQPL-AVLEAEAISIHESDREANLTMAQLGMELIRKQ-QGSPQNILTHCNTGALATGGFGTALGVIRAAH 187          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_NOSP7 (Methylthioribose-1-phosphate isomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=mtnA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  123 VSIDSNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLG--DKLEYLV-SSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRA 692
            +++ +N +  + +  G++ L+DQ +LP E  ++EI  S D   AI+ M+VRG                  L A     +D   FL   DK+  L+ S+RPTAVNL  A +++ ++  +   T  +   + Q   + A+ +  +D+ T +AIG  G + L       K ++LTHCN G+LATAGYGTALGV+R+
Sbjct:    1 MTLSTNHVYPVIWHNGAVSLIDQTRLPNEYTFVEIHRSEDMARAIKTMIVRGAPAIGVAAAYGMY-----LGAREIETSDRHEFLQNLDKVAQLLGSTRPTAVNLFWAISRMMKVAKETLGTVED---IKQTLFQTAQAINVEDLQTCQAIGDNGLTVLP--ASPEKLTLLTHCNAGALATAGYGTALGVVRS 183          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_DESRM (Methylthioribose-1-phosphate isomerase OS=Desulfotomaculum reducens (strain MI-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 69/191 (36.13%), Postives = 99/191 (51.83%), Query Frame = 3
Query:  144 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLV----SSRPTAVNLSDAAAKLKEIISKAAATASEAN--SVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALH 698
            + +I +    LQLLDQ KLP    Y++  D      AI+++ VRG             V    ++A      D  +FL +KLE +     ++RPTAVNL  A  ++   +S    TA E N   + +  +E A  +  +DV +N+ +G YG   L  + +     VLTHCN G+LATAGYGTALGV+RA H
Sbjct:    1 MNAIIWENNQLQLLDQTKLPRTIEYIQCTDYHTVGKAIKKLSVRGAPAIGAAAAYGLVVGAQQVDA-----TDRKTFL-EKLEAIAGELGATRPTAVNLRWALDRMMMRLS----TAPEQNVEDLRKIMLEEAHAIYNEDVESNRKMGEYGQELLPEEAR-----VLTHCNAGALATAGYGTALGVVRAAH 176          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_CHLTE (Methylthioribose-1-phosphate isomerase OS=Chlorobium tepidum GN=mtnA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 60/186 (32.26%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  144 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQ----LKNSKFSVLTHCNTGSLATAGYGTALGVIR 689
            + +I ++ G+ + LDQR LPL+ I++E ++  +   AI+ + VRG               V  +N ++G  A    +  + +  + +SRPTAVNL  A  K++E+   A        ++F    + A  +  D++     I  +G   L+      LK  K +VLTHCNTG+LA  G GTALGVIR
Sbjct:    2 IDAISFKNGTFRYLDQRFLPLQEIHVETKNHQEAIEAIKTLAVRGAPLIGASAGYTV---VLGINEYTGDKAGFPEYFKNLIAEVNASRPTAVNLFFATKKMQEVYD-ANFENDSLEALFAKMTDMAYKIHNDEIDNCDKIARHGVELLKQDFADVLKTRKLNVLTHCNTGTLACCGIGTALGVIR 183          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_DESDA (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=mtnA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 66/173 (38.15%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  174 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRA 692
            L LLDQR LP +      R   D   A++ MVVRG               V  L    G   D A+ L   +E + ++RPTAVNL  A  +++ +   A   A +   +  A+  AA+ M  +DVA  K +G +GA+ +++        VLTHCN G+LATAGYGTALGVIRA
Sbjct:   14 LHLLDQRLLPAQEADFVCRSVEDVVYALQTMVVRGAPAIGVTAAWGC---VLALREAQGP--DWAARLEQGMERIAAARPTAVNLRWAVERMRGVWLAAGGEAGDPAPLLTAFAHAAQTMQDEDVAVCKTLGRHGAACIEDG-----DCVLTHCNAGALATAGYGTALGVIRA 176          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_XANC5 (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mtnA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 68/195 (34.87%), Postives = 101/195 (51.79%), Query Frame = 3
Query:  117 DSVSIDS---NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRA 692
            DS  ID    + ++ + +   +L+LLDQRKLP E  ++    S     AI  + VRG             +   ++ A  G+AA     L   L  L ++RPTAVNL+ A  +++ ++  A A   E  +        A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA
Sbjct:    3 DSAHIDYARYDHIRPLLWTGDALELLDQRKLPFEVAHVRCDSSDAVAEAIHSLAVRGAPAIGIAAGWGVVLAARDIAADDGSAA--LQKLEPALLRLNAARPTAVNLAWALMRMRRVLGAAGADWREVIA------REAQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRA 184          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_XANAC (Methylthioribose-1-phosphate isomerase OS=Xanthomonas axonopodis pv. citri GN=mtnA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 68/195 (34.87%), Postives = 101/195 (51.79%), Query Frame = 3
Query:  117 DSVSIDS---NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRA 692
            DS  ID    + ++ + +   +L+LLDQRKLP E  ++    S     AI  + VRG             +   ++ A  G+AA     L   L  L ++RPTAVNL+ A  +++ ++  A A   E  +        A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA
Sbjct:    3 DSAHIDYARYDHIRPLLWTGDALELLDQRKLPFEVAHVRCDSSDAVAEAIHSLAVRGAPAIGIAAGWGVVLAARDIAADDGSAA--LQKLEPALLRLNAARPTAVNLAWALMRMRRVLGAAGADWREVIA------REAQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRA 184          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_NITOC (Methylthioribose-1-phosphate isomerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=mtnA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 64/189 (33.86%), Postives = 99/189 (52.38%), Query Frame = 3
Query:  123 VSIDSNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIR 689
            +S + + ++++ +    ++LLDQR+LP E IY  I   +D   AI +MVVRG             V +     FS   +     L   L  L ++RPTA+NL+ A A+++ II        +      A +  A  + ++D+A N+ +G  G + ++  +      VLTHCNTGSLAT G+GTALGVIR
Sbjct:    1 MSAEHDQIRAVAWTGAGVRLLDQRRLPQEEIYWTIACVSDVAQAITKMVVRGAPAIGIAAAYG--VVLAARARFSEAGSGWKQLLEADLCDLEAARPTAINLAWALARMQAIIQGLP----DHRDPESALLVEARCIHEEDIAANRRMGELGTTLIEGSV-----GVLTHCNTGSLATGGFGTALGVIR 178          
BLAST of CN188332 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBL (Methylthioribose-1-phosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mtnA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 3
Query:  129 IDSNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRAL 695
            +  + L+ I +    L LLDQR LP  T YL+ +   D   AIREMVVRG             + +  L++         S L  KL+ L+ SRPTAVNL     +      +A  +++    + ++  E A  ML++D+  N  +     S        S  +++THCNTG+LATAG+GTALGVIR+L
Sbjct:    1 MQESGLKPILWTNKELILLDQRVLPGTTSYLKAKTLEDCIFAIREMVVRGAPAIAITGAFGIALYLNGLSS-----QPTFSQLKTKLDELLESRPTAVNLRLVIEEFFSRFPEADYSSANLEKMQKSAEEFALFMLEEDLENNLTLSKNALSLFPKS--PSSLNIITHCNTGALATAGHGTALGVIRSL 182          
The following BLAST results are available for this feature:
BLAST of CN188332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
MTNA_PSEAB9.871e-2036.56Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSEA89.871e-2036.56Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_NOSP79.871e-2033.68Methylthioribose-1-phosphate isomerase OS=Nostoc p... [more]
MTNA_DESRM2.199e-1936.13Methylthioribose-1-phosphate isomerase OS=Desulfot... [more]
MTNA_CHLTE4.899e-1932.26Methylthioribose-1-phosphate isomerase OS=Chlorobi... [more]
MTNA_DESDA6.398e-1938.15Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_XANC58.357e-1934.87Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANAC8.357e-1934.87Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_NITOC1.091e-1833.86Methylthioribose-1-phosphate isomerase OS=Nitrosoc... [more]
MTNA_LEPBL1.425e-1834.92Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188332 ID=CN188332; Name=CN188332; organism=Citrus sinensis; type=EST; length=700bp
GAGGCATACACTCACTTATATACTGTTTTTTCAGCGAATCATTGGTAATA
TTTGCGTCAGCTTCTGCGAAGCGAGATCGTAAAGTAGCCGCAAGAGAGTG
AAAACAGATGGCTCTTGATTCCGTTTCGATCGACAGCAACTCTCTTCAGT
CCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGACCAGAGAAAGCTT
CCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTGCCGATGGATGGTC
TGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCCATTGCTATAGCAG
CGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAATGCATTTAGTGGG
ACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGTTGGAATATCTTGT
CTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCTGCCGCAAAACTCA
AAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGAAGCCAATAGTGTA
TTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCAAAGATGATGTTGC
TACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTTCTTCAGAACCAGC
TCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAACACTGGCAGTCTT
GCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCCGTGCACTTCATTC
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