CN188328

Overview
NameCN188328
Unique NameCN188328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 55/118 (46.61%), Postives = 67/118 (56.78%), Query Frame = -3
Query:  274 CMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAE-DAIVRLPREV-VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 576
            CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE D ++       V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  205 CMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.757e-16
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  268 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 573
            +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+  REV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  153 VDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = -3
Query:  265 LSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 582
            ++C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V    EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  157 ITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  265 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 573
            +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V   +EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  153 VDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  268 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 573
            +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V   REV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  153 VDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.911e-14
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  262 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 573
            +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V   REV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  152 VDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  262 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 573
            +DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V    +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  153 VDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -3
Query:  262 LSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 582
            L+C+DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V     V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  163 LTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.483e-14
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  268 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 573
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE   V    EV PG+   GM V EI   PRMGP FGAM++SG+K A   +K+L
Sbjct:  159 VDPLFISAKAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGPIFGAMLLSGKKVAEDIIKNL 258          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  268 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 573
            +DP  + AK VV + GHD    +   +++  + ++  +PG K+    +AE+  V     V PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  164 VDPLFISAKAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
The following BLAST results are available for this feature:
BLAST of CN188328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
THI4_YEAST4.859e-1846.61Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO7.757e-1646.08Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE1.323e-1542.45Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRFU2.257e-1544.66Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB5.028e-1546.08Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO1.911e-1443.27Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAR3.259e-1437.50Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_HALWD4.257e-1435.38Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_METS59.483e-1439.22Putative thiazole biosynthetic enzyme OS=Metallosp... [more]
THI4_SULTO1.238e-1336.27Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188328 ID=CN188328; Name=CN188328; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTGACCGGAAACAAACACTTTATTCACAAAACCTC
ACAACATCATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAAT
ACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTG
ATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCAGCAGAATCAG
CTGCAGCTAAAATCAGCTCAGGGGGAACACCTCCCACATATGTACCGTCT
AATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTG
CCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTAGGAGCACCAT
CAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCC
CTGGGCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTT
CATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTC
CAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTC
GCTTCCATTACATTGGGATCCATGCAAGAAAGCAATAAGCACAAGAAAAC
ATTATCAATTATGTGACAAAATCACAGAAATTTAGCGCCCTTAGGGGAAA
AGGAAAAAAAAAACAAAAACCAAAGCCTAAACAGTTTTCAGTTTAGTTTT
GATCAAAACCACTCAAACCGAAGTTCCCAAGCTTTTTATTGCTCCACCTA
ATATGAAAAAGCCC
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