CN188328

Overview
NameCN188328
Unique NameCN188328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.513e-11
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  268 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 573
            +DP  + AK V+ + GHD     T  ++ + +G++  +PG K+L  +  E+ +++  +E+ PG+ V GM      G  RMG  FG M ISG+  A + L+ L
Sbjct:  161 IDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMGAVFGGMYISGKIVADMILEKL 260          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = -3
Query:  268 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKS--IGMIEEVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 573
            +DP ++  K+V+   GH+     T ++++ +  IG + ++ G K +     E  +V   +E+ PG+IV GM       +PRMGP FG M++SG+KAA LAL+ L
Sbjct:  155 VDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGNLGKL-GEKPMWSEVGEQLVVDATKEIYPGLIVAGMAANAATCSPRMGPVFGGMLLSGEKAAKLALEKL 257          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  268 LSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 582
            L+C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V    +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  163 LTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of CN188328 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  268 LSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLPREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 582
            L+C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V    +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:  163 LTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
The following BLAST results are available for this feature:
BLAST of CN188328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
THI4_META37.513e-1133.33Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METBF9.813e-1135.58Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALSA9.813e-1132.03Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS39.813e-1132.03Putative thiazole biosynthetic enzyme OS=Halobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188328 ID=CN188328; Name=CN188328; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTGACCGGAAACAAACACTTTATTCACAAAACCTC
ACAACATCATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAAT
ACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTG
ATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCAGCAGAATCAG
CTGCAGCTAAAATCAGCTCAGGGGGAACACCTCCCACATATGTACCGTCT
AATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTG
CCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTAGGAGCACCAT
CAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCC
CTGGGCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTT
CATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTC
CAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTC
GCTTCCATTACATTGGGATCCATGCAAGAAAGCAATAAGCACAAGAAAAC
ATTATCAATTATGTGACAAAATCACAGAAATTTAGCGCCCTTAGGGGAAA
AGGAAAAAAAAAACAAAAACCAAAGCCTAAACAGTTTTCAGTTTAGTTTT
GATCAAAACCACTCAAACCGAAGTTCCCAAGCTTTTTATTGCTCCACCTA
ATATGAAAAAGCCC
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