CN188325

Overview
NameCN188325
Unique NameCN188325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:226..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_XENLA (Translationally-controlled tumor protein homolog OS=Xenopus laevis GN=tpt1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 53/173 (30.64%), Postives = 81/173 (46.82%), Query Frame = -3
Query:  214 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVV--QGAVDVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 717
            M++Y+D +T DE+ SD +   ET +G+  EVEGK +   +GA+D  +    +                 VDIV   +LQE   F K  +  Y+K ++K L   L +   ER   F K  +   K +L    + QF+ GE M+ DG +    Y+E    P  ++  D L   KC
Sbjct:    1 MIIYKDCITEDEMFSDIYKIIETPDGMCLEVEGKVIQREEGAIDDALIGGNASAEFQEDDVGGSSLTSGVDIVMNHKLQET-GFTKDSYKNYIKDYVKQLKAHLEKTNPERVNTFMKGAQETVKKILGNFKNYQFYTGERMNPDGMVGLLDYREDGITPFMIFFKDGLIIEKC 172          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_CAEEL (Translationally-controlled tumor protein homolog OS=Caenorhabditis elegans GN=tct-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 56/182 (30.77%), Postives = 95/182 (52.20%), Query Frame = -3
Query:  214 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSEERQ-----EIFKKNIEGATKFLLSK--LSDLQFFVGESM---HDDGCLVFAYYK--EGATDPTFLYIADALKEVKC 717
            ML+Y+D+ T DEL SDSFP K  ++ +++E +GK VV+   ++ + G+NPS               + +DIV   +L E   + D   F  Y+K+F+K +   + +  +     + FKK I+G    LL+K    +L FF+GE      ++G +    Y+  +G   PT + + +A+ E KC
Sbjct:    1 MLIYKDIFTDDELSSDSFPMKLVDD-LVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEKC 181          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_WUCBA (Translationally-controlled tumor protein homolog OS=Wuchereria bancrofti PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = -3
Query:  217 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKL-----SEERQEIFKKNIEGATKFLLSK--LSDLQFFVGESMHD---DGCLVFAYYK--EGATDPTFLYIADALKEVK 717
            ML+++D  T DEL SDSFP K  + G++WE +G+ VV+   ++ + GANPS               + +D V   RLQE   + D   F +Y K F+K +   +     SE     FK+ I+     LLSK     LQFF+GE M +   +G +    Y+  E    P  + + +AL E K
Sbjct:    1 MLIFKDAFTDDELASDSFPMKLVD-GLIWEFKGRQVVRREGEIQLAGANPSTEGEDGDEGSEECVERGIDFVLNHRLQEMNCYEDLATFKSYCKSFMKKVVELMQKNGKSEAEISEFKRKIQAWVVSLLSKDRFKQLQFFIGERMAEGQGEGQVAVVEYRDEEEGEVPYLMLVKEALVEEK 180          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_SCHJA (Translationally-controlled tumor protein homolog OS=Schistosoma japonicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 51/172 (29.65%), Postives = 87/172 (50.58%), Query Frame = -3
Query:  217 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWV-VQGAVDVD-IGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQE---IFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 717
            M V++D ++GDE+ SDS    +  N +++EV+  ++ V   +D   I ANPS               +V+D+V   RL    +FDKK +  Y+K ++K +  +L +E  E   IF+  I      +     D + ++GESM+ DG +    ++E    P F+++ D L E K
Sbjct:    1 MRVFKDAISGDEMFSDSHS-PQLINDVVYEVDANFITVSNGLDSKLIAANPSGEEGQEEVSDSTE--RVIDLVHASRLVST-SFDKKSYRAYLKGYLKAIKERLQKENPERVSIFESRINEYMVNVFKNFDDYEHYIGESMNPDGMVALMNFRENGVTPYFVFLKDGLIEEK 168          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_CAEBR (Translationally-controlled tumor protein homolog OS=Caenorhabditis briggsae GN=tct-1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 55/182 (30.22%), Postives = 94/182 (51.65%), Query Frame = -3
Query:  214 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSEERQ-----EIFKKNIEGATKFLLSK--LSDLQFFVGESM---HDDGCLVFAYYK--EGATDPTFLYIADALKEVKC 717
            ML+Y+D+ T DEL SDSFP K  ++ +++E +G+ VV+   D+ + G+NPS               + +DIV   +L E   + D   F  Y+K+F+K +   + +  +     + FKK I+     LL+K    +L FF+GE      ++G +    Y+  +G   PT + + +A+ E KC
Sbjct:    1 MLIYKDIFTDDELSSDSFPMKLVDD-LIYEFKGRHVVRKEGDIILAGSNPSAEEGAEDEGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNIIDHMEKNNRDKADVDAFKKKIQAWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAILEEKC 181          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: FKSG2_HUMAN (Putative apoptosis inhibitor FKSG2 OS=Homo sapiens GN=FKSG2 PE=5 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 53/175 (30.29%), Postives = 88/175 (50.29%), Query Frame = -3
Query:  214 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEG---ATKFLLSKLSDLQFFVGESMHDDGCL-VFAYYKEGATDPTFLYIADALKEVKC 717
            M+++QDL++ +E+ SD +   E  NG+  EVE K + +   + D   IG N S                 VDIV    LQE   F K+ +  Y+K ++K +  KL E+R E  K  I G     K + +   + QFF+GE+++  G + +  Y K+G  DP + ++ + L+  +C
Sbjct:    1 MIIFQDLISHNEMFSDIYKIWEITNGLCLEVEQKMLSKTTGNTDDSLIGRNSSSESTEDEVTESTIITS-VDIVTNHHLQES-IFTKEAYKKYIKDYMKSINEKLEEQRPERVKLFITGNEEQIKHIFANFQNYQFFIGENLNPPGMVALLNYRKDGQYDPIYDFLRNGLEIKRC 173          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_BRUMA (Translationally-controlled tumor protein homolog OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.977e-13
Identity = 60/181 (33.15%), Postives = 88/181 (48.62%), Query Frame = -3
Query:  217 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKL-----SEERQEIFKKNIEGATKFLLSK--LSDLQFFVGESMHD---DGCLVFAYYK--EGATDPTFLYIADALKEVK 717
            ML+++D  T DEL SDSFP K  + G++WE +G+ VV+   ++ + GANPS               + +D V   RLQE   + D   F +Y K F+K +   +     SE     FK+ I      LLSK     LQFF+GE M +   +G +    Y+  E    P  + + +AL E K
Sbjct:    1 MLIFKDAFTDDELASDSFPMKLVD-GLIWEFKGRQVVRREGEIQLAGANPSAEGEDGDEGSEECVERGIDFVLNHRLQEMNCYEDLVTFKSYCKSFMKKVVELMQKNGKSEAEISEFKRKIPAWVVSLLSKDRFKQLQFFIGERMAEGQGEGQVAVVEYRDEEDGEVPYLMLVKEALIEEK 180          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_IXOSC (Translationally-controlled tumor protein homolog OS=Ixodes scapularis GN=Tctp PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = -3
Query:  217 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKN-----IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYY---KEGATDPTFLYIADALKEVK 717
            ML+++D+LTGDE+ +DS  YK  ++ I +E+E + V +   +V + GANPS                 +D+V   RL E   F K  +  Y+K + K L  K  E+ +   + N     +  A K +L ++ D+QFF+GES + DG +    Y   K G   P  ++    L E K
Sbjct:    1 MLLFKDILTGDEMFTDSVKYKLVDDCI-FEIECEHVTRKVGEVALDGANPSAEEVEEGTEEGTESG--LDLVLNMRLVET-GFSKTDYKNYLKTYTKALMDKWKEDGKSEAEVNEAKSKLTEAVKKVLPRIGDMQFFLGESSNPDGIVALLEYRPNKSGGETPVVMFFKHGLLEEK 172          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_TRIPS (Translationally-controlled tumor protein homolog OS=Trichinella pseudospiralis PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 61/180 (33.89%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  214 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKL-----SEERQEIFKKNIEGATKFLLSK--LSDLQFFVGESMH-DDGCLVFAYYKE--GATDPTFLYIADALKEVKC 717
            M++Y+DL +GDEL SD+FP K   N +++E  GK VV+   +V + GANPS                 +DIV   +L E P + D K F  ++K ++K L  K+     SEE    FKKN++     LL K    +LQFF G   +  +G L    Y++      P  + I   L   KC
Sbjct:    1 MIIYRDLFSGDELCSDTFPMK-LVNDVVFEFTGKHVVRKLGEVTLEGANPSAEEFDEGTEEQMESG--IDIVLNHQLMEMPMYQDIKIFKDWIKEYMKKLVEKMKSDGESEESISKFKKNMQEYVTSLLKKDRFKELQFFSGPGENAAEGQLAIVEYRQVSDTEQPIVMLIKQGLVVEKC 177          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_BRABE (Translationally-controlled tumor protein homolog OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 53/172 (30.81%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  217 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQ-GAVDVD-IGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 717
            M++Y+D+++GDE+ SD++  K  ++   +E+EGK   + G +D   IG N S                  +IV   RLQE   F K Q+  Y+K + K +   L++   ER + FK       K ++    + QFF GE M  DG +    Y+E    P  L+  D L+E K
Sbjct:    1 MIIYKDIVSGDEMFSDAYKMKVLDD-YFYELEGKITTEKGGIDESAIGGNASAEDAVEGLEESGTTG--CNIVIAQRLQETQ-FTKAQYKVYIKDYSKKVLEYLTKNKPERVDGFKAASAAGMKRVMGNFKNWQFFTGEKMDQDGMVALMDYREDGKTPYMLFFKDGLEEEK 168          
The following BLAST results are available for this feature:
BLAST of CN188325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TCTP_XENLA6.145e-1530.64Translationally-controlled tumor protein homolog O... [more]
TCTP_CAEEL5.202e-1430.77Translationally-controlled tumor protein homolog O... [more]
TCTP_WUCBA6.794e-1433.15Translationally-controlled tumor protein homolog O... [more]
TCTP_SCHJA8.873e-1429.65Translationally-controlled tumor protein homolog O... [more]
TCTP_CAEBR8.873e-1430.22Translationally-controlled tumor protein homolog O... [more]
FKSG2_HUMAN1.513e-1330.29Putative apoptosis inhibitor FKSG2 OS=Homo sapiens... [more]
TCTP_BRUMA1.977e-1333.15Translationally-controlled tumor protein homolog O... [more]
TCTP_IXOSC1.281e-1231.25Translationally-controlled tumor protein homolog O... [more]
TCTP_TRIPS2.185e-1233.89Translationally-controlled tumor protein homolog O... [more]
TCTP_BRABE3.728e-1230.81Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188325 ID=CN188325; Name=CN188325; organism=Citrus sinensis; type=EST; length=737bp
AGTAAAAACTATTAAGTTATTTGGTAATTCAATCTCAAACCATAAAACCC
AATAATTAGGAGCAGAAAAACATATTGTTTATGTCAAAATAAAAACTAAA
AAACAGCAAGCACAAGTCCCGAGTAAACCAGTACAAAAGATACATAAAAA
TAACCGCGGGCAATAATTAAAACTAGAACTACAGCAGGCACTTCCTCTTC
GAAGCCCGGCTTAGCACTTCACCTCCTTCAATGCATCAGCAATATACAAA
AATGTTGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGACAAGACAGCC
ATCATCATGCATGCTCTCCCCAACAAAGAATTGAAGGTCACTGAGCTTCG
AGAGCAAGAACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGC
CTCTCCTCACTCAGCTTGGGCGTCAGCAACTTGATGAATCTCTTCATGTA
TGTTACAAACTGCTTCTTGTCAAAAGCAGGTTGCTCCTGCAGCCTGAATG
TGTCGACAATGTCGACCACCTTCACGGCTTGGTCATCAACACCCTCATCC
TCATCAGCTCCTTCGGCAGAAGGATTTGCACCAATGTCAACATCAACGGC
TCCTTGTACAACCCACTTTCCCTCAACTTCCCACAGAATCCCATTCTCAG
TTTCCTTGTAGGGAAAAGAGTCGGAGAGAAGCTCATCACCGGTGAGGAGA
TCTTGATAGACCAACATGATTGCAGTCTCTCTCGCGA
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