CN188325

Overview
NameCN188325
Unique NameCN188325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_ASPFU (Translationally-controlled tumor protein homolog OS=Aspergillus fumigatus GN=AFUA_1G16840 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 54/179 (30.17%), Postives = 88/179 (49.16%), Query Frame = -3
Query:  217 MLVYQDLLTGDELLSDSFPYKETENGILWEVE-GKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRL-----QEQPAFDKKQFVTYMKRFIKLLTPKLSEE-----RQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 717
            M++Y+D+++GDE+LSD+F  KE + G+L+E +  K++ +   D+ + GANPS              V V DI D FRL     +E     K  F +++K ++K +  KL E+       + FKK    A K +L+   +    +G SM  D   V   ++E    P        L+E+K
Sbjct:    1 MIIYKDIISGDEVLSDNFKIKEVD-GVLYECDCRKYLKRKNEDIQLEGANPSAEEGDDDAGGDGEEVMVHDIEDQFRLVWLKTEEGMKPSKDAFKSHLKTYMKKVLAKLQEKGVPEAEIDAFKKGAPAAVKKILANYDNYDVLMGHSMDGDAMHVLIDFREDGVTPYATLWKHGLEEMK 178          
BLAST of CN188325 vs. ExPASy Swiss-Prot
Match: TCTP_EMENI (Translationally-controlled tumor protein homolog OS=Emericella nidulans GN=AN0641 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 55/179 (30.73%), Postives = 84/179 (46.93%), Query Frame = -3
Query:  217 MLVYQDLLTGDELLSDSFPYKETENGILWEVE-GKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFD---------KKQFVTYMKRFIKLLTPK-LSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 717
            M++Y+D+++GDE+LSD++  K T +G+L+E +  K++ +   D ++ GANPS              V V DI D FRL    A D         K    TYMK+ +K L  K   +E    FKK    A   +L    +    +GESM  D   +   ++E    P        L+E+K
Sbjct:    1 MIIYKDIISGDEVLSDTYNIK-TVDGVLYECDCRKYLKKTNEDFELEGANPSAEGGDDEGGAEGGEVMVHDIEDQFRLVWLKAEDGAKPPKDAFKGHLKTYMKKVLKALQDKGAPDETINEFKKGAPAAVNKILKNYDNYDVLMGESMDGDAMHILIDFREDGVTPYATLWKHGLEEMK 178          
The following BLAST results are available for this feature:
BLAST of CN188325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TCTP_ASPFU3.728e-1230.17Translationally-controlled tumor protein homolog O... [more]
TCTP_EMENI5.383e-1130.73Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188325 ID=CN188325; Name=CN188325; organism=Citrus sinensis; type=EST; length=737bp
AGTAAAAACTATTAAGTTATTTGGTAATTCAATCTCAAACCATAAAACCC
AATAATTAGGAGCAGAAAAACATATTGTTTATGTCAAAATAAAAACTAAA
AAACAGCAAGCACAAGTCCCGAGTAAACCAGTACAAAAGATACATAAAAA
TAACCGCGGGCAATAATTAAAACTAGAACTACAGCAGGCACTTCCTCTTC
GAAGCCCGGCTTAGCACTTCACCTCCTTCAATGCATCAGCAATATACAAA
AATGTTGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGACAAGACAGCC
ATCATCATGCATGCTCTCCCCAACAAAGAATTGAAGGTCACTGAGCTTCG
AGAGCAAGAACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGC
CTCTCCTCACTCAGCTTGGGCGTCAGCAACTTGATGAATCTCTTCATGTA
TGTTACAAACTGCTTCTTGTCAAAAGCAGGTTGCTCCTGCAGCCTGAATG
TGTCGACAATGTCGACCACCTTCACGGCTTGGTCATCAACACCCTCATCC
TCATCAGCTCCTTCGGCAGAAGGATTTGCACCAATGTCAACATCAACGGC
TCCTTGTACAACCCACTTTCCCTCAACTTCCCACAGAATCCCATTCTCAG
TTTCCTTGTAGGGAAAAGAGTCGGAGAGAAGCTCATCACCGGTGAGGAGA
TCTTGATAGACCAACATGATTGCAGTCTCTCTCGCGA
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