CK939686 | Citrus Genome Database

Overview


Name	CK939686
Unique Name	CK939686
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	624

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_PIPCE (ATP synthase subunit c, chloroplastic OS=Piper cenocladum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_PHYPA (ATP synthase subunit c, chloroplastic OS=Physcomitrella patens GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_PHAAO (ATP synthase subunit c, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_PELHO (ATP synthase subunit c, chloroplastic OS=Pelargonium hortorum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_PANGI (ATP synthase subunit c, chloroplastic OS=Panax ginseng GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_OENPA (ATP synthase subunit c, chloroplastic OS=Oenothera parviflora GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_OENGL (ATP synthase subunit c, chloroplastic OS=Oenothera glazioviana GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_OENEH (ATP synthase subunit c, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_OENBI (ATP synthase subunit c, chloroplastic OS=Oenothera biennis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_OENAR (ATP synthase subunit c, chloroplastic OS=Oenothera argillicola GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CK939686 vs. ExPASy Swiss-Prot

BLAST of CK939686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_PIPCE	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Piper cen...	[more]
ATPH_PHYPA	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Physcomit...	[more]
ATPH_PHAAO	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Phalaenop...	[more]
ATPH_PELHO	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Pelargoni...	[more]
ATPH_PANGI	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Panax gin...	[more]
ATPH_OENPA	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENGL	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENEH	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENBI	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]
ATPH_OENAR	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Oenothera...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004747_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939686 ID=CK939686; Name=CK939686; organism=Citrus sinensis; type=EST; length=624bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA