CK939686 | Citrus Genome Database

Overview


Name	CK939686
Unique Name	CK939686
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	624

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_LIRTU (ATP synthase subunit c, chloroplastic OS=Liriodendron tulipifera GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_LEPVR (ATP synthase subunit c, chloroplastic OS=Lepidium virginicum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_LEMMI (ATP synthase subunit c, chloroplastic OS=Lemna minor GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_LACSA (ATP synthase subunit c, chloroplastic OS=Lactuca sativa GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_JASNU (ATP synthase subunit c, chloroplastic OS=Jasminum nudiflorum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_ILLOL (ATP synthase subunit c, chloroplastic OS=Illicium oligandrum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_HELAN (ATP synthase subunit c, chloroplastic OS=Helianthus annuus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_GUIAB (ATP synthase subunit c, chloroplastic OS=Guizotia abyssinica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_GOSHI (ATP synthase subunit c, chloroplastic OS=Gossypium hirsutum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_FAGEA (ATP synthase subunit c, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CK939686 vs. ExPASy Swiss-Prot

BLAST of CK939686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_LIRTU	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Liriodend...	[more]
ATPH_LEPVR	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Lepidium ...	[more]
ATPH_LEMMI	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Lemna min...	[more]
ATPH_LACSA	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Lactuca s...	[more]
ATPH_JASNU	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Jasminum ...	[more]
ATPH_ILLOL	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Illicium ...	[more]
ATPH_HELAN	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Helianthu...	[more]
ATPH_GUIAB	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Guizotia ...	[more]
ATPH_GOSHI	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Gossypium...	[more]
ATPH_FAGEA	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Fagopyrum...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004747_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939686 ID=CK939686; Name=CK939686; organism=Citrus sinensis; type=EST; length=624bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA