CK939686

Overview
NameCK939686
Unique NameCK939686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSI (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. indica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSA (ATP synthase subunit c, chloroplastic OS=Oryza sativa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_ORYNI (ATP synthase subunit c, chloroplastic OS=Oryza nivara GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_MAIZE (ATP synthase subunit c, chloroplastic OS=Zea mays GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_LOLPR (ATP synthase subunit c, chloroplastic OS=Lolium perenne GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_HORVU (ATP synthase subunit c, chloroplastic OS=Hordeum vulgare GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CRYJA (ATP synthase subunit c, chloroplastic OS=Cryptomeria japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGL+VGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLSVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CHAVU (ATP synthase subunit c, chloroplastic OS=Chara vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGL+SI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLSSIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CERDE (ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLIS+ASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISSASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_BRADI (ATP synthase subunit c, chloroplastic OS=Brachypodium distachyon GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of CK939686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ORYSI6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]
ATPH_ORYSA6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]
ATPH_ORYNI6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza niv... [more]
ATPH_MAIZE6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Zea mays ... [more]
ATPH_LOLPR6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Lolium pe... [more]
ATPH_HORVU6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Hordeum v... [more]
ATPH_CRYJA6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Cryptomer... [more]
ATPH_CHAVU6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Chara vul... [more]
ATPH_CERDE6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Ceratophy... [more]
ATPH_BRADI6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Brachypod... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939686 ID=CK939686; Name=CK939686; organism=Citrus sinensis; type=EST; length=624bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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