CN188308

Overview
NameCN188308
Unique NameCN188308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 2 
Query:  449 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVK 736
            KE  + +  + DVPGL K++VK+ + DG +L I G                 RS G +     LPD+AK ++IKA ++NGVL + +P+ E  K DVK
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVK 155
The following BLAST results are available for this feature:
BLAST of CN188308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HS17A_ORYSJ9.252e-1137.1117.9 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188308 ID=CN188308; Name=CN188308; organism=Citrus sinensis; type=EST; length=741bp
AGTACAACCCAATTTCTCAAAAAACTCCCCTAGTTACCGAAAAAAAATGG
CTTTGGCTCGTTTGGCTTTGAGGAACGTGCAGCAAAGGGTGTCAACTTCT
TCCCCTTCTCTGGCAAATTTGCATAATAATCTTGGTGAGAGAAGTGCTAG
TACCATCGGTGGTGTACAAAGGCAAAAGTGGAGTAATGAGTTGTTGAAGA
GGTTCATGGCAACAGCTGCCAATGATGAGAAAAAACAAGACAGAGAAGTC
GCCGTGACTGAAAAAAGATCAAGGCTCTTTCCAAGGAGAAGAGGCAGGAG
GGGGAGTCTTTGGAGGAACAATGACATTCCCGTACTTGCTGAGTTCTTTC
CTTCAGGGCTTGGAAATGCACTCATGCAAGCAACCGAAAACATTAACAGG
ATATTCGAAAACTTGAACTTCACACCATCACAACTCATGGGGCGGGTGAA
AGAGCAAGACGACTGCTACAAGCTGCGGTATGACGTTCCGGGCCTAGGCA
AAGATGATGTGAAGATCACCATTCATGATGGGGTTCTGACAATAAAGGGT
GAGCACAAGGAAGAGGAAGAGGAAAGCTCTGACGACGAACACTGGTCAGC
AAGGAGCTATGGTTACTACAACACAAGCCTCGCGCTGCCTGATGATGCGA
AGGCTGACGAGATTAAGGCCGAGTTGAAAAACGGGGTTCTTAATATTGTA
ATTCCTAGGACCGAAAAGCCTAAGCAGGATGTGAAGGAAGT
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