CN188305

Overview
NameCN188305
Unique NameCN188305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 46/152 (30.26%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  275 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPKGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 706
            ++T   ++  N M   DP  G+Y+    ++RG +  K+V+  + +V+ K    FV+W P   K  +     I  +G  +A        + N+T+I E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++  L  +Y +    TAD
Sbjct:  293 DITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTAD 444          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 47/144 (32.64%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  302 ELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 706
            ELT  ++D  ++M   D    G++++   M+RG +S++EV+  +  ++ +N+  FV W P + K  +   P     G   AST      I N T++ ++F++V++ F  MF ++AF+H Y GEGM+E EFT+A  ++ +L  +Y
Sbjct:  295 ELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 46/133 (34.59%), Postives = 74/133 (55.64%), Query Frame = -3
Query:  281 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVAEYQQYQDAT 676
            + +  ADP+H  YL  + M RG +   ++   +  +  K S  FV W     K+S+C +PP G   +   + N+T ++  F  + E+F  ++++KA LH Y   EGM+E  FTEA S+++ L+ EY Q  DAT
Sbjct:  331 HQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQL-DAT 460          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = -3
Query:  347 LTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSSVCDIPP------KGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 703
            +T  ++   N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G  MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  200 ITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  275 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 706
            +LT Q ++  N M   DPR+G+Y+  + ++RG    ++ +  +  ++ K+S   VEW P   K  +    P  +  A             + + N+T++ E + +    +F  M  ++AF+HWY GEGM+E EF+EA     DL A  + Y++  AD
Sbjct:  290 QLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVAAD 443          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = -3
Query:  281 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVAEYQQYQDAT 676
            + +  ADPRH  YL  + + RG +   ++   +  +  K +  FV W     K+S+C +PP G   +   + N+T ++  F  + E+FT ++++KA LH Y   +GM+E  FTEA S+++ L+ EY    DAT
Sbjct:  331 HQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDL-DAT 460          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = -3
Query:  344 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 706
            E+T   ++  N M   DPR+G+Y+    ++RG +  K+V      ++ K +  FV+  P   K  +C  PP  +          +  + N+T+I E +  +S +F  ++ ++AF+HWY GEGM+E EF
Sbjct:  291 EVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 34/117 (29.06%), Postives = 61/117 (52.14%), Query Frame = -3
Query:  380 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLH 706
            E+T   ++ ++ M   D R G+Y+    +FRG ++ K+ +    NV+ K ++ FVEW P   K  +    P  L          A   + N+T+I E ++R++ +F  MF ++AF+H
Sbjct:  264 EITNACFEPQSQMVRCDTRKGKYMACCLLFRGDVNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380          
The following BLAST results are available for this feature:
BLAST of CN188305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TBA8_CAEEL7.253e-1830.26Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA1_ENTHI2.110e-1732.64Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBE_HUMAN8.866e-1634.59Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBA_DICPU1.158e-1531.82Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA_GLOLA1.512e-1529.30Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBE_MOUSE2.580e-1533.08Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBA_AJECA7.505e-1530.47Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_ENCHE3.855e-1129.06Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188305 ID=CN188305; Name=CN188305; organism=Citrus sinensis; type=EST; length=708bp
TTTTTTTTTTTTTTAGCTTCAGTGATATCTTTTAACTACTTAACCCAAAC
ATACATCATTTATATTGAAACACATCATACCCATCCCCCAATACAACGAG
ACAAGTTACATACCAATAAACATCACATTCTAATGATCCCTCAACAACAG
AAACAATAATCACAAACTGAAAGAGCGCCGACAAGAAATAAATTTCAGAC
AAACTGGCCCTGGAACATTAGAAAAAGACACCTCATGCTGCAACTTCCTC
TTCTTCTTCCTCGTACTCCTCGTCGTCAGCAGTTGCATCCTGATACTGCT
GGTACTCTGCCACCAAGTCATTCATGTTACTCTCAGCCTCGGTGAACTCC
ATCTCGTCCATTCCCTCACCGGTGTACCAGTGCAAGAAAGCTTTCCTCCG
AAACATAGCCGTAAATTGCTCACTGACTCGCCTAAACATCTCCTGAATTG
ACGTTGAATTTCCAATGAAAGTGGATGCCATTTTCAGACCCTTAGGCGGG
ATGTCACACACGCTCGACTTGACATTATTTGGTATCCACTCGACAAAGTA
CGAAGAGTTCTTGTTTTGGACATTGATCATTTGTTCATCAACCTCTTTAG
TACTCATCTTACCACGGAACATGGCCGAAGCAGTTAGGTAACGACCGTGG
CGTGGGTCAGCAGCACACATCATGTTCTTAGCATCCCACATCTGCTGGGT
TAGTTCCG
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