CN188305
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18 Identity = 46/152 (30.26%), Postives = 80/152 (52.63%), Query Frame = -3 Query: 275 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPKGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 706 ++T ++ N M DP G+Y+ ++RG + K+V+ + +V+ K FV+W P K + I +G +A + N+T+I E + R+ +F M+ ++AF+HW+ GEGM+E EF EA ++ L +Y + TAD Sbjct: 293 DITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTAD 444
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17 Identity = 47/144 (32.64%), Postives = 84/144 (58.33%), Query Frame = -3 Query: 302 ELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEY 706 ELT ++D ++M D G++++ M+RG +S++EV+ + ++ +N+ FV W P + K + P G AST I N T++ ++F++V++ F MF ++AF+H Y GEGM+E EFT+A ++ +L +Y Sbjct: 295 ELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16 Identity = 46/133 (34.59%), Postives = 74/133 (55.64%), Query Frame = -3 Query: 281 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVAEYQQYQDAT 676 + + ADP+H YL + M RG + ++ + + K S FV W K+S+C +PP G + + N+T ++ F + E+F ++++KA LH Y EGM+E FTEA S+++ L+ EY Q DAT Sbjct: 331 HQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQL-DAT 460
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15 Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = -3 Query: 347 LTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSSVCDIPP------KGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 703 +T ++ N+M P G+Y+ M+RG + KE + + N++N+ S FV+W P K + + P G MA T + N+T+I ++F R++ +F M+ ++AF+HWY GEGM+E E Sbjct: 200 ITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15 Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = -3 Query: 275 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 706 +LT Q ++ N M DPR+G+Y+ + ++RG ++ + + ++ K+S VEW P K + P + A + + N+T++ E + + +F M ++AF+HWY GEGM+E EF+EA DL A + Y++ AD Sbjct: 290 QLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVAAD 443
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15 Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = -3 Query: 281 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVAEYQQYQDAT 676 + + ADPRH YL + + RG + ++ + + K + FV W K+S+C +PP G + + N+T ++ F + E+FT ++++KA LH Y +GM+E FTEA S+++ L+ EY DAT Sbjct: 331 HQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDL-DAT 460
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15 Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = -3 Query: 344 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 706 E+T ++ N M DPR+G+Y+ ++RG + K+V ++ K + FV+ P K +C PP + + + N+T+I E + +S +F ++ ++AF+HWY GEGM+E EF Sbjct: 291 EVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11 Identity = 34/117 (29.06%), Postives = 61/117 (52.14%), Query Frame = -3 Query: 380 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLH 706 E+T ++ ++ M D R G+Y+ +FRG ++ K+ + NV+ K ++ FVEW P K + P L A + N+T+I E ++R++ +F MF ++AF+H Sbjct: 264 EITNACFEPQSQMVRCDTRKGKYMACCLLFRGDVNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380 The following BLAST results are available for this feature:
BLAST of CN188305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 378
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188305 ID=CN188305; Name=CN188305; organism=Citrus sinensis; type=EST; length=708bpback to top |