CN188305

Overview
NameCN188305
Unique NameCN188305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.464e-74
Identity = 130/145 (89.66%), Postives = 142/145 (97.93%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQM+DAKNMMCA+DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPPKGLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  288 ELTQQMFDAKNMMCASDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.464e-74
Identity = 129/145 (88.97%), Postives = 141/145 (97.24%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELT Q +DAKNMMCAADPRHGRYLTAS MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPKGLKM++TF+GNST+IQEMF+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  288 ELTSQCFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSATFVGNSTAIQEMFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.464e-74
Identity = 129/145 (88.97%), Postives = 141/145 (97.24%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQ +DAKNMMCAADPRHGRYLTAS MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPKGLKM++ FIGNST+IQEMF+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  263 ELTQQQFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 407          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.217e-73
Identity = 128/145 (88.28%), Postives = 142/145 (97.93%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQ +DAKNMMCAADPRHGRYLTA+ MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+K+SVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQD TA++
Sbjct:  288 ELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPQGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDGTAEE 432          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.590e-73
Identity = 128/145 (88.28%), Postives = 142/145 (97.93%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQM+DAKNMMCA+DPRHGRYLTA A+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KS VCDIPPKGLKM+ TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  288 ELTQQMFDAKNMMCASDPRHGRYLTACALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSGVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.076e-73
Identity = 129/145 (88.97%), Postives = 142/145 (97.93%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQM+DAKNMM A+DP HGRYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPKGLKM++TFIGN+T+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT ++
Sbjct:  285 ELTQQMFDAKNMMAASDPAHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSATFIGNNTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVEE 429          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.541e-73
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = -3
Query:  296 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 706
            ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKE DEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+ YQQ
Sbjct:  288 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEADEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSGYQQ 424          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.030e-72
Identity = 128/145 (88.28%), Postives = 140/145 (96.55%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQM+DAKNMMC +DPRHGRYLTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  288 ELTQQMFDAKNMMCTSDPRHGRYLTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPLGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.346e-72
Identity = 129/145 (88.97%), Postives = 139/145 (95.86%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQM+DAKNMM AADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSSVCDIPPKGLKMA TFIGN+T IQEMFRRV EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT ++
Sbjct:  288 ELTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSVCDIPPKGLKMAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEE 432          
BLAST of CN188305 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.296e-72
Identity = 125/145 (86.21%), Postives = 141/145 (97.24%), Query Frame = -3
Query:  272 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 706
            ELTQQ +DAKNMMCAADPRHGR+LTAS MFRG+MSTKEVDEQM+NVQ KNSSYFVEWIPNN+K+SVCDIPPKGLKM+STF+GNST+IQEMF+RV EQFTAM++RKAFLHWYTGEGMD+MEFTEAESNMNDLV+EYQQYQ+A+ADD
Sbjct:  288 ELTQQCFDAKNMMCAADPRHGRFLTASCMFRGRMSTKEVDEQMLNVQTKNSSYFVEWIPNNIKASVCDIPPKGLKMSSTFVGNSTAIQEMFKRVGEQFTAMYKRKAFLHWYTGEGMDDMEFTEAESNMNDLVSEYQQYQEASADD 432          
The following BLAST results are available for this feature:
BLAST of CN188305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
TBB_PLAF75.464e-7489.66Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB4_OOMCK5.464e-7488.97Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB2_OOMCK5.464e-7488.97Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]
TBB_PHYCI1.217e-7388.28Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]
TBB_EIMTE1.590e-7388.28Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB_EUGGR2.076e-7388.97Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBB3_GOSHI3.541e-7395.62Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_PLAFA1.030e-7288.28Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB_TRYBR1.346e-7288.97Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB3_OOMCK2.296e-7286.21Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188305 ID=CN188305; Name=CN188305; organism=Citrus sinensis; type=EST; length=708bp
TTTTTTTTTTTTTTAGCTTCAGTGATATCTTTTAACTACTTAACCCAAAC
ATACATCATTTATATTGAAACACATCATACCCATCCCCCAATACAACGAG
ACAAGTTACATACCAATAAACATCACATTCTAATGATCCCTCAACAACAG
AAACAATAATCACAAACTGAAAGAGCGCCGACAAGAAATAAATTTCAGAC
AAACTGGCCCTGGAACATTAGAAAAAGACACCTCATGCTGCAACTTCCTC
TTCTTCTTCCTCGTACTCCTCGTCGTCAGCAGTTGCATCCTGATACTGCT
GGTACTCTGCCACCAAGTCATTCATGTTACTCTCAGCCTCGGTGAACTCC
ATCTCGTCCATTCCCTCACCGGTGTACCAGTGCAAGAAAGCTTTCCTCCG
AAACATAGCCGTAAATTGCTCACTGACTCGCCTAAACATCTCCTGAATTG
ACGTTGAATTTCCAATGAAAGTGGATGCCATTTTCAGACCCTTAGGCGGG
ATGTCACACACGCTCGACTTGACATTATTTGGTATCCACTCGACAAAGTA
CGAAGAGTTCTTGTTTTGGACATTGATCATTTGTTCATCAACCTCTTTAG
TACTCATCTTACCACGGAACATGGCCGAAGCAGTTAGGTAACGACCGTGG
CGTGGGTCAGCAGCACACATCATGTTCTTAGCATCCCACATCTGCTGGGT
TAGTTCCG
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