CN188303

Overview
NameCN188303
Unique NameCN188303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:88..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_RALEH (Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhL PE=3 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.195e-61
Identity = 125/246 (50.81%), Postives = 167/246 (67.89%), Query Frame = 2
Query:    8 GALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            GAL    VPKKL VIGAG IGLE+GSVW RLGS+VTV+E     + + D  + K+ Q+ L KQ +KF L   V  V    +GV +      G  +T LE D ++VS GR P T  LGLD +G+  D+ G I V++  AT +PG++AIGDV+ GPMLAHKAE++GVA  E +AG+  H+DY+ VP V+YT PE+A VGKTE Q+K  G EY+ G+FPF+AN RA  +  A+G V++LA+ +TD+ILG
Sbjct:  174 GALKFPAVPKKLGVIGAGVIGLELGSVWRRLGSDVTVLEALPAFLGAADEGVAKEAQKQLTKQGLKFSLGVNVNEVTTGKNGVTVKYTDKDGKAQT-LEVDRLIVSVGRVPNTDNLGLDAVGLAADQRGFIEVDDHCATKVPGLWAIGDVVRGPMLAHKAEDEGVAVAERIAGQKPHIDYNCVPWVIYTFPEIAWVGKTEAQLKAEGREYKAGQFPFMANGRALGMGHADGFVKMLADAKTDEILG 418          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_THESC (Dihydrolipoyl dehydrogenase OS=Thermus scotoductus GN=lpd PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 8.017e-58
Identity = 116/248 (46.77%), Postives = 166/248 (66.94%), Query Frame = 2
Query:    5 TGALALNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            T AL + E +PK+L+VIG G +GLE+G ++ RLGSEVT++E+  +I+P+ D E     +++LEK+ +K    TK VG +   DG+ + LE A GG +  +  D +LV+ GR P T GLGL+K GV+ D+ G I VN R  T+ PGVYAIGDV   P+LAHKA ++G+   E  AGK+   D+ +VP VVYT PE A VG TEE+ ++ G   +VGKFPF A+ RA  +  AEG+++++ + ETD +LG
Sbjct:  156 TRALRVEEGIPKRLLVIGGGAVGLELGQIYHRLGSEVTLIEYMPEILPAGDRETAALLRKALEKEGLKVRTGTKAVGYEKKQDGLHVLLEAAQGGSQEEIVVDKILVAVGRRPRTEGLGLEKAGVKVDERGFIQVNARMETSAPGVYAIGDVARPPLLAHKAMKEGLVAAENAAGKNALFDF-QVPSVVYTGPEWAGVGLTEEEARKAGYNVKVGKFPFSASGRALTLGGAEGLIKVVGDAETDLLLG 402          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEPU (Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4)

HSP 1 Score: 223.016 bits (567), Expect = 1.367e-57
Identity = 117/247 (47.37%), Postives = 164/247 (66.40%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            TGAL    VPK+L VIGAG IGLE+GSVWARLG+EVTV+E     + + D  + K+ Q++L KQ +   L  +V G  ++G+ V++T   A G +K  +  D ++V+ GR P T  L     GV  D+ G I V++  AT++PGVYAIGDV+ G MLAHKA E+G+  VE + G    ++YD +P V+YTHPE+A VGKTE+ +K  GVE  VG FPF A+ RA A +D  G V+++A+ +TD++LG
Sbjct:  172 TGALEFQAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFLMAADTAVSKEAQKTLTKQGLDIKLGARVTGSKVNGNEVEVTYTNAEGEQK--ITFDKLIVAVGRRPVTTDLLAADSGVTIDERGYIFVDDYCATSVPGVYAIGDVVRGMMLAHKASEEGIMVVERIKGHKAQMNYDLIPSVIYTHPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDRVLG 416          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_AZOVI (Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.786e-57
Identity = 116/247 (46.96%), Postives = 160/247 (64.78%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            TGAL    VP KL VIGAG IGLE+GSVWARLG+EVTV+E     +P++D ++ K+ Q+ L KQ +K +L  +V G ++    V +    A G +      D ++V+ GR P T  L     GV  D+ G I V++  AT++PGVYAIGDV+ G MLAHKA E+GV   E +AG    ++YD +P V+YTHPE+A VGKTE+ +K  GV   VG FPF A+ RA A +D  G V+++A+ +TD++LG
Sbjct:  172 TGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAF--DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLG 416          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_PSEFL (Dihydrolipoyl dehydrogenase OS=Pseudomonas fluorescens GN=lpd PE=1 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.975e-56
Identity = 116/247 (46.96%), Postives = 159/247 (64.37%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            TGAL    VPKKL VIGAG IGLE+GSVWARLG+EVTV+E     +P+ D +I K+  + L KQ +   L  +V   ++    V +T   A G +K     D ++V+ GR P T  L     GV  D+ G I V++   T++PGV+AIGDV+ G MLAHKA E+GV   E +AG    ++YD +P V+YTHPE+A VGKTE+ +K  GVE  VG FPF A+ RA A +D  G+V+++A+ +TD++LG
Sbjct:  172 TGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGEQKETF--DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPSVIYTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVLG 416          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEAE (Dihydrolipoamide dehydrogenase OS=Pseudomonas aeruginosa GN=lpdG PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.975e-56
Identity = 116/247 (46.96%), Postives = 159/247 (64.37%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            TGAL    VPKKL VIGAG IGLE+GSVWARLG+EVTV+E     +P+ D +I K+  + L KQ +   L  +V   ++    V +T   A G +K     D ++V+ GR P T  L     GV  D+ G I V++   T++PGV+AIGDV+ G MLAHKA E+GV   E +AG    ++YD +P V+YTHPE+A VGKTE+ +K  GVE  VG FPF A+ RA A +D  G+V+++A+ +TD++LG
Sbjct:  172 TGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGEQKETF--DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPSVIYTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVLG 416          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH1_BACST (Dihydrolipoyl dehydrogenase OS=Bacillus stearothermophilus GN=pdhD PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.730e-52
Identity = 103/247 (41.70%), Postives = 159/247 (64.37%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            TGAL L EVPK LVVIG GYIG+E+G+ +A  G++VT++E A +I+   + ++    ++ L+K+ ++ +      G +   DGV +T E  A GE   ++AD VLV+ GR P T  LGL++IG++    G I V+++  T++P ++AIGD++PGP LAHKA  +G    E +AG    VDY  +P VV++ PE ASVG  E+Q K+ G++    KFPF AN RA A++D +G ++++  +E   I+G
Sbjct:  167 TGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE--ANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIG 411          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH1_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=pdhD PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.121e-51
Identity = 103/248 (41.53%), Postives = 159/248 (64.11%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            TGALAL E+PKKLVVIG GYIG E+G+ +A  G+E+ ++E   +I+P  + ++     R L+K+  ++        GV+   DGV +T E   G EKT+ +AD VL++ GR P T  LGL+++G+E    G +  +++  TN+P +YAIGD+I GP LAHKA  +G    E +AG+   +DY  +P VV++ PE+ASVG TE Q KE G++    KFPF AN RA ++++ +G ++++  +E   ++G
Sbjct:  167 TGALALKEIPKKLVVIGGGYIGTELGTAYANFGTELVILEGGDEILPGFEKQMSSLVTRRLKKKGNVEIHTNAMAKGVEERPDGVTVTFE-VKGEEKTV-DADYVLITVGRRPNTDELGLEQVGIEMTDRGIVKTDKQCRTNVPNIYAIGDIIEGPPLAHKASYEGKIAAEAIAGEPAEIDYLGIPAVVFSEPELASVGYTEAQAKEEGLDIVAAKFPFAANGRALSLNETDGFMKLITRKEDGLVIG 412          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_HAEIN (Dihydrolipoyl dehydrogenase OS=Haemophilus influenzae GN=lpdA PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.913e-51
Identity = 106/249 (42.57%), Postives = 159/249 (63.86%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGGS 751
            T AL L EVPKKL+++G G IGLEMG+V+  LGSEV VVE    ++P+ D ++   + + +EK K K ML+TKV  V+   DG+ +++E  A  +      D VLV+ GR P    +   K GVE D  G I V+++  TN+P +YAIGD++  PMLAHK   +G    E +AG+  + D   +P + YT PEVA VGKTE++ K+ G+ Y V KFP+ A+ RA A + +EG+ +++ +++T ++LGG+
Sbjct:  167 TDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKDVVGIYTKQVEK-KFKLMLETKVTAVEAKDDGIYVSMEGKACNDTK--RYDAVLVAIGRVPNGKLIDAGKAGVEVDDRGFIHVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASECSEGMTKLIFDKDTHRVLGGA 412          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_VIBPA (Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyticus GN=lpd PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.619e-50
Identity = 105/252 (41.67%), Postives = 163/252 (64.68%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEA---DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGGS 751
            T AL L EVP+KL+++G G IGLEMG+V+  LGS+V VVE    ++P+ D +I K + + + K K K ML+TKV  V+   DG+ +++E    G+K   EA   D VLV+ GR P    +  +K G+E D+ G I V+++  TN+P ++AIGD++  PMLAHK   +G    E ++GK  + D   +P + YT PEVA VGKTE++ K  G++Y V  FP+ A+ RA A D ++G+ +++ ++ET +++GG+
Sbjct:  166 TDALELKEVPEKLLIMGGGIIGLEMGTVYHSLGSKVEVVEMFDQVIPAADKDIVKVYTKRI-KDKFKLMLETKVTAVEAKEDGIYVSME----GKKAPAEAERYDAVLVAIGRVPNGKLIDGEKAGLEIDERGFINVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVISGKKHYFDPKVIPSIAYTEPEVAWVGKTEKEAKAEGIKYEVATFPWAASGRAIASDCSDGMTKLIFDKETHRVIGGA 412          
The following BLAST results are available for this feature:
BLAST of CN188303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
DLDH_RALEH1.195e-6150.81Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha ... [more]
DLDH_THESC8.017e-5846.77Dihydrolipoyl dehydrogenase OS=Thermus scotoductus... [more]
DLDH2_PSEPU1.367e-5747.37Dihydrolipoamide dehydrogenase OS=Pseudomonas puti... [more]
DLDH_AZOVI1.786e-5746.96Dihydrolipoyl dehydrogenase OS=Azotobacter vinelan... [more]
DLDH_PSEFL1.975e-5646.96Dihydrolipoyl dehydrogenase OS=Pseudomonas fluores... [more]
DLDH2_PSEAE1.975e-5646.96Dihydrolipoamide dehydrogenase OS=Pseudomonas aeru... [more]
DLDH1_BACST1.730e-5241.70Dihydrolipoyl dehydrogenase OS=Bacillus stearother... [more]
DLDH1_BACSU1.121e-5141.53Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH_HAEIN1.913e-5142.57Dihydrolipoyl dehydrogenase OS=Haemophilus influen... [more]
DLDH_VIBPA1.619e-5041.67Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188303 ID=CN188303; Name=CN188303; organism=Citrus sinensis; type=EST; length=755bp
AGTCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCA
TTGGGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTT
GGTTCAGAGGTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCAT
GGATGGGGAAATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGA
TGAAATTCATGCTCAAAACTAAGGTGGTGGGAGTTGATTTATCTGGTGAT
GGTGTCAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAAAAGACCATACT
TGAAGCTGATGTTGTTCTTGTGTCTGCTGGCCGGACTCCATTCACCGCTG
GGCTCGGGCTGGATAAGATAGGAGTGGAAACCGATAAGATGGGACGGATA
CCAGTTAATGAGAGATTTGCTACAAACATACCTGGTGTTTATGCGATTGG
AGACGTAATTCCAGGACCAATGTTAGCTCACAAGGCAGAAGAGGATGGGG
TTGCTTGTGTTGAATTCTTAGCTGGTAAACATGGCCATGTGGACTATGAT
AAGGTCCCTGGAGTTGTCTACACACACCCTGAGGTTGCTTCAGTTGGGAA
GACTGAGGAGCAGGTAAAGGAACTTGGTGTTGAGTACCGTGTGGGGAAAT
TCCCTTTCTTGGCAAATAGCCGAGCAAAAGCTATTGATGATGCTGAAGGA
ATAGTCCAGATTTTGGCTGAGGAAGAGACCGACCAGATATTGGGGGGTTC
ATATT
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