CN188303

Overview
NameCN188303
Unique NameCN188303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:88..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.061e-41
Identity = 89/249 (35.74%), Postives = 151/249 (60.64%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGGS 751
            T AL+L  +P + ++IG G IGLEM ++++ LGS+V +V+     +PS+D +I   + +S++K + K +L T V  V+ S D   +        ++ +   D +LV+ GR+P    LGL+KIG++ ++ G I +N++  TNI  +YAIGDV   PMLAHKA +      E ++GK  + +   +P V YT PE+A VG +E++ +   ++Y V  FP+ A+ RA A +   G+ +++  + T++I+GGS
Sbjct:  166 TDALSLKSIPNRFLIIGGGIIGLEMATIYSALGSKVDIVDRFNAFLPSVDKDITDIYIKSIKK-RFKLLLNTHVKSVEKSKDNDLIVKIAEENSDENVCCYDNILVAIGRSPNVDFLGLEKIGLKLNESGFIEINQQLKTNISHIYAIGDVTGFPMLAHKAVQQAHIAAEVISGKKHYFEPKVIPSVAYTDPEIAWVGLSEKEAENNDIDYEVSLFPWSASGRAHASNCTLGMTKLIFNKNTNKIIGGS 413          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH2_HALMA (Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marismortui GN=lpdA2 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.061e-41
Identity = 90/247 (36.44%), Postives = 146/247 (59.11%), Query Frame = 2
Query:   11 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE--ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            ALAL  VP+KL+V+GAGYIG+E+ +V+A+LG+EVTVVE   D++P  + +I    +   E+  + F         + + +G+++        ++ + E  A+  LV+ GR P T  L LD I ++TD+ G IP +++  T    V+A+GDV   PMLAHKA  +G       AG+    D+  +P  V+T PE+A+VG TE + +  G E  +G+ P  AN RA  +++ EG V+++A+ + + +LG
Sbjct:  172 ALALESVPEKLLVVGAGYIGMELSTVFAKLGAEVTVVEMLDDVLPGYEDDIATVVRDRAEELGIDFNFGEAADNWEETDEGIRVQ---TVDEDEVVTEYNAEKCLVAVGREPVTDTLALDNIDLQTDENGVIPTDDQCRTAFESVFAVGDVAGEPMLAHKAMAEGEVAARAAAGEPAAFDHQAIPAAVFTDPEIATVGMTESEAEAAGFEPVIGQMPVRANGRALTVNEKEGFVRVVADADEEFLLG 415          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 88/246 (35.77%), Postives = 148/246 (60.16%), Query Frame = 2
Query:   11 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGG 748
            A+++  +PKKL++IG G IGLEM ++++ LGS V +++ + DI+P +D ++   F+RS+      F   + V+ +    +G+ + +       K     D++LV+ GR P T  L + K+G++TD  G I VNE+F TNIP +YAIGDVI  PMLAHK   +G    E ++GK  + +   +P V YT PE+A VG TE + ++  + Y V    +    RA +   +EG+ +++ +++T++I+GG
Sbjct:  169 AVSIPSIPKKLLIIGGGIIGLEMATIYSALGSNVDIIDNSHDILPHLDRDVIDIFKRSVNHDYNIFF-NSNVIKIVQEKNGLLVHIAENDNKNKRFELYDIILVAIGRVPNTDMLDISKVGLKTDNNGFIKVNEQFCTNIPNIYAIGDVIGQPMLAHKGTHEGHIVAEVISGKKHYFNPFVIPCVSYTEPEIAWVGITENEARKNNINYEVSSVLWNTLGRAVSSQCSEGVTKLIFDKKTNKIIGG 413          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH3_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=acoL PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.163e-40
Identity = 93/247 (37.65%), Postives = 144/247 (58.30%), Query Frame = 2
Query:   11 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGGS 751
            AL+L+E+P  LV++G G IG E   ++ARLGS+VT++E A  ++P+ D +I + FQ  LE+  ++    +++  VD +      T    +G  +   +AD VLV+ GR P   GL L++ GV+    G IPVN    TN+P +YA GD I G  LAH A  +G+      +G+   ++   VP  +YT PE+A +G TE Q + +  + ++G+F F AN +A     AEG V+I+AE E  +I+G S
Sbjct:  163 ALSLSEIPSSLVIVGGGVIGCEYAGLFARLGSQVTIIETADRLIPAEDEDIARLFQEKLEEDGVEVHTSSRLGRVDQTAK----TAIWKSGQREFKTKADYVLVAIGRKPRLDGLQLEQAGVDFSPKG-IPVNGHMQTNVPHIYACGDAIGGIQLAHAAFHEGIIAASHASGRDVKINEKHVPRCIYTSPEIACIGMTERQARSIYGDVKIGEFSFSANGKALIKQQAEGKVKIMAEPEFGEIVGVS 404          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTE (Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum GN=lpd PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.679e-39
Identity = 97/247 (39.27%), Postives = 140/247 (56.68%), Query Frame = 2
Query:   11 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGG 748
            AL L EVPK ++V+G G IG+EM   +A+ GS+VT+VE    ++P+ + E+ +  +RS EK  +      K+  V +S  GV   L       +T L A  +LV+ G T    GLGLD +GVET++ G I  + +  T+ PG+YAIGDV  G +LAHKA  +    VE +AGK    +    +P  VY  P VASVG TEE     G +  VG+  F A+ +A A    EG V+++ +  T ++LGG
Sbjct:  172 ALILKEVPKSMIVVGGGAIGVEMAWFYAKAGSKVTIVELMPRMLPAEEAEVSEALKRSFEKAGITVHCGAKLDNVAVSESGVSAELVVEGSAPQT-LNASCLLVAVGVTGAIDGLGLDAVGVETER-GFIRTDGQCRTSAPGIYAIGDVRGGMLLAHKASAEAAIAVEAIAGKSPEPLSEPLIPRCVYAQPSVASVGLTEEAAVNAGYQVAVGRSQFAASGKANAYGQLEGFVKLVFDAATGKMLGG 416          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_SYNY3 (Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.422e-38
Identity = 97/256 (37.89%), Postives = 141/256 (55.08%), Query Frame = 2
Query:   11 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT-----NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE----YRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            A+ L  +P+ + +IG+GYIGLE   V+  LG EVT++E   D++P  D EI K  +R L K +      T V    + +G  V++ L  A   E    LE D  LV+ GR P T  LGL+ +GVETD+ G I VN++         +P ++A+GD     MLAH A   GV  VE + G+   VDY  +P   +THPE++ VG TE Q KELG +        K  F  NS+A A  + +GI +++  ++T ++LG
Sbjct:  170 AVKLETLPQWIAIIGSGYIGLEFSDVYTALGCEVTMIEALPDLMPGFDPEIAKIAERVLIKSR-DIETYTGVFATKIKAGSPVEIELTDAKTKEVIDTLEVDACLVATGRIPATKNLGLETVGVETDRRGFIEVNDQMQVIKDGKPVPHLWAVGDATGKMMLAHAASGQGVVAVENICGRKTEVDYRAIPAAAFTHPEISYVGLTEAQAKELGEKEGFVVSTAKTYFKGNSKALAEKETDGIAKVVYRQDTGELLG 424          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_MYCLE (Dihydrolipoyl dehydrogenase OS=Mycobacterium leprae GN=lpd PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.857e-38
Identity = 88/243 (36.21%), Postives = 136/243 (55.97%), Query Frame = 2
Query:   26 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGG 748
            E+P  +V++GAG IG+E G V    G +VT+VEF    +P+ D E+ K+ ++  +K  +K +  TKV  +  +G  V + +  +  G+   L+AD VL + G  P   G GLDK+GV       + +++   TN+  +YAIGDV     LAH AE  GV   E +AG       DY  +P   +  P VAS G TE+Q ++ G +  V KFPF AN++A  + D  G V+++A+ +  ++LGG
Sbjct:  172 ELPDSIVIVGAGAIGIEFGYVLKNYGVDVTIVEFLPRAMPNEDAEVSKEIEKQFKKMGIKILTGTKVESISDNGSHVLVAV--SKDGQFQELKADKVLQAIGFAPNVDGYGLDKVGVALTADKAVDIDDYMQTNVSHIYAIGDVTGKLQLAHVAEAQGVVAAEAIAGAETLALSDYRMMPRATFCQPNVASFGLTEQQARDGGYDVVVAKFPFTANAKAHGMGDPSGFVKLVADAKYGELLGG 412          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH_CHLP8 (Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lpd PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.136e-38
Identity = 96/247 (38.87%), Postives = 140/247 (56.68%), Query Frame = 2
Query:   11 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILGG 748
            AL L +VP+ ++V+G G IG+EM   +A+ G++VT+VE    ++P+ + E+ +  +RS EK  +      K+  V +S  GV   L  A G E   +EA  +LV+ G T    GLGLD  G+ET++ G I  +E   T+  G+YAIGDV  G +LAHKA  +    VE +AGK    +    +P  VY  P VASVG TEE     G +  VG+  F A+ +A A    EG V+++   ET ++LGG
Sbjct:  172 ALILKDVPESMIVVGGGAIGVEMAWFYAKAGAKVTIVELMPRLLPAEEAEVSEALKRSFEKVDITVQCGAKLGNVAISEFGVNADL-LAEGKEPQKIEASCMLVAVGVTGVIDGLGLDAAGIETER-GFIRTDELCRTSASGIYAIGDVRGGMLLAHKASAEAAIAVEAIAGKLPEPLSEPLIPRCVYAQPSVASVGLTEEAAIAAGYKVLVGRSQFAASGKANAYGQLEGFVKLVFNAETGKMLGG 416          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 92/248 (37.10%), Postives = 141/248 (56.85%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR-IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            T ALA   +PK+LVV+G GYIGLE+G+ + +LG EV VVE    I+P  D E+ K   ++L +  ++  L   ++G   +G  V+        GE+  + AD VLV+ GR P + G  L+ +G+  D  GR + V+++  T++  V+AIGD+   PMLAH+A   G    E +AGK        +P V +T PEV   G + EQ K+ G++  V  FPF AN RA  ++  EG V+++A  +   ++G
Sbjct:  168 TEALAPGSLPKRLVVVGGGYIGLELGTAYRKLGVEVAVVEAQPRILPGYDEELTKPVAQALRRLGVELYLGHSLLGPSENGVRVR-----DGAGEEREIAADQVLVAVGRKPRSEGWNLESLGL--DMNGRAVKVDDQCRTSMRNVWAIGDLAGEPMLAHRAMAQGEMVAELIAGKRRQFAPVAIPAVCFTDPEVVVAGLSPEQAKDAGLDCLVASFPFAANGRAMTLEANEGFVRVVARRDNHLVVG 408          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.572e-37
Identity = 96/251 (38.25%), Postives = 140/251 (55.78%), Query Frame = 2
Query:    5 TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD----LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            T ALA   +P+ LVV+G GYIGLE+G  + +LG++V+VVE    I+P+ D E+      SL+K  +   L   V G +    L+ DG          G +  LEAD VLV+ GR P T G  L+ + ++ +    I ++ER  T++  V+AIGDV   PMLAH+A   G    E +AGK    +   +  V +T PEV  VGKT EQ  + G++  V +FPF AN RA +++   G V+++A  +   ILG
Sbjct:  163 TEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGK---------GGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAA-IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILG 403          
The following BLAST results are available for this feature:
BLAST of CN188303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
DLDH_BUCAP3.061e-4135.74Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH2_HALMA3.061e-4136.44Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marism... [more]
DLDH_BUCBP3.997e-4135.77Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH3_BACSU1.163e-4037.65Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH_CHLTE1.679e-3939.27Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum ... [more]
DLDH_SYNY31.422e-3837.89Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (... [more]
DLDH_MYCLE1.857e-3836.21Dihydrolipoyl dehydrogenase OS=Mycobacterium lepra... [more]
DLDH_CHLP84.136e-3838.87Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvu... [more]
DLDH1_PSEAE5.402e-3837.10Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
DLDH1_PSEPU1.572e-3738.25Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188303 ID=CN188303; Name=CN188303; organism=Citrus sinensis; type=EST; length=755bp
AGTCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCA
TTGGGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTT
GGTTCAGAGGTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCAT
GGATGGGGAAATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGA
TGAAATTCATGCTCAAAACTAAGGTGGTGGGAGTTGATTTATCTGGTGAT
GGTGTCAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAAAAGACCATACT
TGAAGCTGATGTTGTTCTTGTGTCTGCTGGCCGGACTCCATTCACCGCTG
GGCTCGGGCTGGATAAGATAGGAGTGGAAACCGATAAGATGGGACGGATA
CCAGTTAATGAGAGATTTGCTACAAACATACCTGGTGTTTATGCGATTGG
AGACGTAATTCCAGGACCAATGTTAGCTCACAAGGCAGAAGAGGATGGGG
TTGCTTGTGTTGAATTCTTAGCTGGTAAACATGGCCATGTGGACTATGAT
AAGGTCCCTGGAGTTGTCTACACACACCCTGAGGTTGCTTCAGTTGGGAA
GACTGAGGAGCAGGTAAAGGAACTTGGTGTTGAGTACCGTGTGGGGAAAT
TCCCTTTCTTGGCAAATAGCCGAGCAAAAGCTATTGATGATGCTGAAGGA
ATAGTCCAGATTTTGGCTGAGGAAGAGACCGACCAGATATTGGGGGGTTC
ATATT
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