CN188303

Overview
NameCN188303
Unique NameCN188303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:88..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_PSEMY (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas mendocina (strain ymp) GN=sthA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.987e-29
Identity = 79/244 (32.38%), Postives = 129/244 (52.87%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L   P++L++ GAG IG E  S+++ LG  V +++    ++  +D EI       L    +      +   ++   +GV L L+    G+K  ++AD +L   GRT  T  LGL+ IG+  +  G+I V+E + T +  +YA GDVI  P LA  A + G +    +         D VP  +YT PE++S+GKTE ++ +  V Y VGK  F   +RA+   +  G+++IL   ET ++LG
Sbjct:  169 LSLGHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDNRDQLLSFLDSEISDALSYHLRNNNVLIRHNEEYERIEGVENGVVLHLK---SGKK--IKADALLWCNGRTGNTDQLGLENIGIAVNSRGQIQVDEHYRTEVSNIYAAGDVIGWPSLASAAADQGRSAAGSIVENGSWRFVDDVPTGIYTIPEISSIGKTERELTQAKVPYEVGKAFFKGMARAQISVEPVGMLKILFHRETLEVLG 407          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_PSEFS (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 78/244 (31.97%), Postives = 130/244 (53.28%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L   P+KL++ GAG IG E  S+++ LG  V +V+    ++  +D EI +          +      +   V+   +GV L L+    G+K  ++AD +L   GRT  T  LG++ IGV+ +  G+I V+E + T +  +Y  GDVI  P LA  A + G +    +         + VP  +YT PE++S+GK E ++ +  V Y VGK  F + +RA+   + +G+++IL   ET ++LG
Sbjct:  169 LSLGHTPRKLIIYGAGVIGCEYASIFSGLGVLVELVDNRDQLLSFLDSEISQALSYHFSNNNITVRHNEEYERVEGLDNGVILHLK---SGKK--IKADALLWCNGRTGNTDKLGMENIGVKVNSRGQIEVDENYRTCVTNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRYVNDVPTGIYTIPEISSIGKNEHELTKAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEVLG 407          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_YERE8 (Soluble pyridine nucleotide transhydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 81/245 (33.06%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L L+  P+ +++ GAG IG E  S++  L  +V ++     ++  +D E+            +      +   ++ + DGV + L+    G+K  ++AD +L + GRT  T+GLGL+KIG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+ +  + V Y VG+  F   +RA+ +    G ++IL   ET QILG
Sbjct:  170 LQLSHEPQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFEQIEGTVDGVIVHLK---SGKK--VKADCLLYANGRTGNTSGLGLEKIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANTHLIEDIPTGIYTIPEISSVGKTEQDLTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILG 409          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_SALTY (Soluble pyridine nucleotide transhydrogenase OS=Salmonella typhimurium GN=sthA PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 80/245 (32.65%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G ++IL   ET +ILG
Sbjct:  170 LSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILG 409          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_SALTI (Soluble pyridine nucleotide transhydrogenase OS=Salmonella typhi GN=sthA PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 80/245 (32.65%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G ++IL   ET +ILG
Sbjct:  170 LSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILG 409          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_SALPK (Soluble pyridine nucleotide transhydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 80/245 (32.65%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G ++IL   ET +ILG
Sbjct:  170 LSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILG 409          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_SALPC (Soluble pyridine nucleotide transhydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 80/245 (32.65%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G ++IL   ET +ILG
Sbjct:  170 LSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILG 409          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_SALPB (Soluble pyridine nucleotide transhydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 80/245 (32.65%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G ++IL   ET +ILG
Sbjct:  170 LSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILG 409          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_SALPA (Soluble pyridine nucleotide transhydrogenase OS=Salmonella paratyphi A GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 80/245 (32.65%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G ++IL   ET +ILG
Sbjct:  170 LSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILG 409          
BLAST of CN188303 vs. ExPASy Swiss-Prot
Match: STHA_SALG2 (Soluble pyridine nucleotide transhydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 80/245 (32.65%), Postives = 132/245 (53.88%), Query Frame = 2
Query:   14 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVQILAEEETDQILG 745
            L+L+  P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G ++IL   ET +ILG
Sbjct:  170 LSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILG 409          
The following BLAST results are available for this feature:
BLAST of CN188303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
STHA_PSEMY5.987e-2932.38Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEFS1.742e-2831.97Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_YERE82.275e-2833.06Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_SALTY2.275e-2832.65Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALTI2.275e-2832.65Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALPK2.275e-2832.65Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALPC2.275e-2832.65Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALPB2.275e-2832.65Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALPA2.275e-2832.65Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALG22.275e-2832.65Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188303 ID=CN188303; Name=CN188303; organism=Citrus sinensis; type=EST; length=755bp
AGTCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAGAAACTCGTGGTCA
TTGGGGCAGGCTACATTGGGCTGGAGATGGGCTCAGTTTGGGCCAGGCTT
GGTTCAGAGGTCACTGTTGTTGAATTTGCAGCTGATATCGTCCCAAGCAT
GGATGGGGAAATTCGCAAGCAATTTCAGCGTTCACTTGAGAAGCAGAAGA
TGAAATTCATGCTCAAAACTAAGGTGGTGGGAGTTGATTTATCTGGTGAT
GGTGTCAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAAAAGACCATACT
TGAAGCTGATGTTGTTCTTGTGTCTGCTGGCCGGACTCCATTCACCGCTG
GGCTCGGGCTGGATAAGATAGGAGTGGAAACCGATAAGATGGGACGGATA
CCAGTTAATGAGAGATTTGCTACAAACATACCTGGTGTTTATGCGATTGG
AGACGTAATTCCAGGACCAATGTTAGCTCACAAGGCAGAAGAGGATGGGG
TTGCTTGTGTTGAATTCTTAGCTGGTAAACATGGCCATGTGGACTATGAT
AAGGTCCCTGGAGTTGTCTACACACACCCTGAGGTTGCTTCAGTTGGGAA
GACTGAGGAGCAGGTAAAGGAACTTGGTGTTGAGTACCGTGTGGGGAAAT
TCCCTTTCTTGGCAAATAGCCGAGCAAAAGCTATTGATGATGCTGAAGGA
ATAGTCCAGATTTTGGCTGAGGAAGAGACCGACCAGATATTGGGGGGTTC
ATATT
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