CN188281

Overview
NameCN188281
Unique NameCN188281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188281_ssr331 microsatellite CN188281_ssr331:331..340. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.439e-30
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = -3
Query:  492 VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHW 755
            V   CCL VEE LNSVYRQ R AD SIGPLEIRVV +GTF++LMDYA+SRGASINQYKAPRCV   P++ELL+GRV + +FSP  P W
Sbjct:  515 VFEDCCLAVEEGLNSVYRQCRAADRSIGPLEIRVVADGTFDKLMDYALSRGASINQYKAPRCVRPGPVVELLDGRVQATYFSPKCPKW 602          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  486 EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCV-SFTPILELLNGRVVSKHFSPAAPHWVP 758
            +++ +CC+ VEE L+ +YRQ R  + SIG LEIRVVK GTFE+LMD  IS+G S NQYK PRCV S +   +LLNG V++  FSP  P WVP
Sbjct:  494 KLMEECCVAVEEELDYIYRQCRTKERSIGALEIRVVKPGTFEKLMDLIISQGGSFNQYKTPRCVKSNSATFKLLNGHVMASFFSPRDPTWVP 585          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.546e-22
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  486 DEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVP 761
            D+ +  CC  VE+ L+ VYR+ R  D SIGPLEIRVV  GTF+ LMD+ +S+G+S+NQYK PRCV     LE+L+ RV+ + FS   P W P
Sbjct:  513 DKTMEDCCSEVEDCLDYVYRRCRNRDKSIGPLEIRVVSLGTFDSLMDFCVSQGSSLNQYKTPRCVKSGGALEILDSRVIGRFFSKRVPQWEP 604          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = -3
Query:  498 EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAP 758
            ++L  CC  VEESL+ VYR+ R  D SIGPLEIR+V+ G F+ LMD  +S G+SINQYK PRC+  +  L+LLN +V++  FSP  P
Sbjct:  501 QLLESCCAAVEESLDYVYRRCRAHDRSIGPLEIRLVEAGAFDALMDLLVSHGSSINQYKTPRCIESSLALKLLNSKVIACFFSPQDP 587          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = -3
Query:  498 LNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAP 752
            + +CCL VE+  + +YR+ R    SI  LEIR++ +G F+ LMD+ +SRG S +QYK P  +     + +L  RVV + FS A P
Sbjct:  527 MEKCCLAVEDHFDEMYRKIRHR-GSISALEIRILSHGAFDALMDFFVSRGTSASQYKTPTAIRSKEAMMVLEERVVGRFFSQATP 610          
The following BLAST results are available for this feature:
BLAST of CN188281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GH34_ORYSJ9.439e-3070.45Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ARATH1.460e-2256.52Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH5.546e-2252.17Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH311_ORYSJ1.784e-2054.02Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH37_ORYSJ6.796e-1241.18Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188281 ID=CN188281; Name=CN188281; organism=Citrus sinensis; type=EST; length=766bp
CCTTTTTAGACAAAGAAAATATACATTAATTAATAATTTAAAGCATCACC
CGATCTAATTACAAATTTGCCAGAATTAAATACAGGACATGGAACTAAAG
CTGTTCATGGCAAGCACTTCCAACGCCTTTTCCTCAACTTTCAGAAAGCT
GAAAGAAAATTAAAAGAGACACGACGACGACAACGACATGCCATCGACAT
TCCATAGACACTTACATCACGCGCACAGGGAGATTATGTGAACTTATTGC
ACAAACACACACTACCATCAAATTTCAAAAGAAGCTAAAAGACGCTTTTA
AAAGTTCAATTAACAACAAAGAGATGACATAGAGAGAGAGGCTGCTCTGA
ATCTGATCTCGGTCTCCTCAAGCTACTAGCTGGACCTTTTTGGTTGGAAC
CCCTGGAAAATTTCTCTAGAAATTTCTTTATTCTATAGTGCCATACATGA
CGCTCGTCATGGTGCAGTCCTCAACGTCGTCGTTCTGGGACCCAGTGAGG
AGCAGCTGGGCTAAAATGCTTTGAGACCACCCTACCATTAAGCAGTTCCA
GAATGGGAGTGAAACTAACACACCTTGGCGCTTTGTACTGATTAATTGAC
GCGCCCCTTGAAATGGCATAGTCCATTAGCTCCTCAAATGTCCCATTTTT
CACCACCCTTATCTCTAGTGGTCCAATTGAATTATCAGCAACTCGGCCTT
GTCGATACACCGAGTTCAGCGACTCTTCCACTACCAGGCAACATTGATTC
AGCACCTCATCACTTG
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