CK939607

Overview
NameCK939607
Unique NameCK939607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939607 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:  480 ALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVD 647
            A+P S+DWR  GAV  VK+Q  CG+CWAF+ IA VE I KI  G L  LSEQ+++D
Sbjct:    1 AVPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLD 56
[Close]
BLAST of CK939607 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 46/160 (28.75%), Postives = 78/160 (48.75%), Query Frame = 3 
Query:  204 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDXXTXXNEGCN 677
            E+   F+ + ++  ++Y +  E   R +IF  NL        E+  T + G+  F+DLT EE+  ++ G R  A       +      P   E++P S DWRK   A++ +KDQ +C  CWA +    +E + +I     + +S QEL+D      +GC+
Sbjct:   37 ELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLY-GYRRAAGGVPSMGREIRSEEPE--ESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCG-RCGDGCH 192
The following BLAST results are available for this feature:
BLAST of CK939607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
BROM2_ANACO1.216e-1157.14Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CATW_HUMAN4.622e-1128.75Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004748_C03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IVF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939607 ID=CK939607; Name=CK939607; organism=Citrus sinensis; type=EST; length=679bp
GGGGACACTCTGCCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAA
AAGTTCTTTTCTCAAAAGATGGGTTTGTTTAAATCACCAACCATGGCCAT
GTTTTTACTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTG
TATCTTATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGAC
GATGAGGTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGC
TTATAACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAA
ATCTTAGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTT
GGGTTGAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCA
TCTGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGA
GCAACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGAT
TGGAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGG
GAGTTGCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGA
TTGTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTNN
NNTACATNNNATAATGAAGGATGTAATGG
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