CK939598

Overview
NameCK939598
Unique NameCK939598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.364e-46
Identity = 100/163 (61.35%), Postives = 117/163 (71.78%), Query Frame = 3
Query:  102 MSLIPSFFGN--RRSSVFDPFSLD-VWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEI 581
            MSLIP+ + N  RRS++FDPFSLD +WDPF  F LPS  S+   S+   ET+A  NAR+DWKETPEAH FKADLPG+              L+ISGQR  E+E+KNDTWHR ERSSG F R+FRLPEN K+DQ+KA MENGVLTVTVPK  EA K  VKAI +
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPF--FGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPK-NEAPKPQVKAINV 160          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.038e-46
Identity = 99/158 (62.66%), Postives = 114/158 (72.15%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVWDPFRDFPLPSGYSSAVS--SQFP----PETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RRS+VFDPFSLD+WDPF  FP  SG SS+ S    FP     ET+A   AR+DWKETPEAH FKAD+PGL              LQISG+R  E+E+K D WHR ERSSG F RRFRLP+N K +QIKASMENGVLTVTVPK EEA+K +VK+I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPK-EEAKKPDVKSIQISG 161          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.358e-45
Identity = 95/158 (60.13%), Postives = 112/158 (70.89%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVWDPFRDFPLPSGY--SSAVSSQFP----PETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RRS+VFDPFSLD+WDPF  FP  SG   S ++   FP     ET+A   AR+DWKETPEAH FKAD+PGL              LQISG+R  E+E+K D WHR ERSSG F RRFRLPEN K +QIKASMENGVLTVTVPK EE +K +VK+I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQVTG 161          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.386e-45
Identity = 94/152 (61.84%), Postives = 107/152 (70.39%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RRS+VFDPFSLD+WDPF      S + S V +    +T+A  NAR+DWKETPE+H FKADLPG+              L ISGQR  E+EDKND WHR ERSSG F RRFRLPEN K+DQ+KA MENGVLTVTVPK  E +K  VKAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPF-----DSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKA-EVKKPEVKAIEISG 150          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.772e-45
Identity = 93/152 (61.18%), Postives = 107/152 (70.39%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RRS+VFDPFSLD+WDPF      S + S V +    +T+A  NAR+DWKETPE+H FKADLPG+              L ISGQR  E+EDKND WHR ERSSG F RRFRLPEN K+DQ+KA +ENGVLTVTVPK  E +K  VKAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPF-----DSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKA-EVKKPEVKAIEISG 150          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 6.334e-44
Identity = 92/152 (60.53%), Postives = 110/152 (72.37%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RRS+VFDPFSLD+WDPF  FP  SG S ++  +   + +A   AR+DWKETPEAH FKAD+PGL              LQISG+R  E+E+K D WHR ERSSG F RRFRLPEN K +QIKASMENGVLTVTVPK EE +K +VK+I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSG-SGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQITG 154          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.080e-43
Identity = 92/156 (58.97%), Postives = 108/156 (69.23%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPP----ETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RR + FDPFSLD+WDP   FP  SG SS+ S    P    + +A   AR+DWKETPE H FKAD+PGL              LQISG+R  E+E+K+D WHR ERSSG F RRFRLPEN K +QIKASMENGVLTVTVPK EE +K +VK+I+ISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQISG 159          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.195e-42
Identity = 93/152 (61.18%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RRS+VFDPF+ D WDPF        + S V +    +T+A  NARVDWKETPE+H FKADLPG+              L ISGQR  E+EDKND WHR ERSSG F RRFRLPEN K+DQ+KASMENGVLTVTVPK  E +K  VKAIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGV-----FRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKA-EVKKPEVKAIEISG 149          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.754e-39
Identity = 91/157 (57.96%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVW-DPFRDF----PLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RRS+VFDPF+ D+W DPF  F    P  SG SS        ET+A  NARVDWKETPEAH FK DLPG+              L +SG+R  E+EDKND WHR ERSSG F RRFRLPE+ K++++KA +ENGVLTVTVPK  E +K  VKAIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS--------ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKA-EVKKPEVKAIEISG 151          
BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.499e-37
Identity = 87/157 (55.41%), Postives = 105/157 (66.88%), Query Frame = 3
Query:  132 RRSSVFDPFSLDVW-DPFRDF----PLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 587
            RR++VFDPF+ D+W DPF  F    P  SG  S        ET+A  NAR+DWKETPEAH FKADLPG+              L +SG+R  E+EDKND WHR ERSSG F RRFRL E+ K++++KA +ENGVLTVTVPK  E +K  VKAI+ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTFRSIVPAISGGGS--------ETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA-EVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of CK939598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HSP11_CHERU1.364e-4661.3518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17A_ORYSJ3.038e-4662.6617.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ORYSJ3.358e-4560.1318.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ4.386e-4561.8416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ9.772e-4561.1816.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ6.334e-4460.5317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ1.080e-4358.9717.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ1.195e-4261.1816.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS16A_WHEAT2.754e-3957.9616.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT7.499e-3755.4116.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004748_B01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939598 ID=CK939598; Name=CK939598; organism=Citrus sinensis; type=EST; length=639bp
GGGGGTCTGAAGAAAGGCAACTTTCCTGTAATCATTTACATATCCTACAT
TCTGCAACAGCCACTTTTCCATTAGTTCGTAACCGAAAAGAAAACTAGAA
AATGTCGCTAATTCCAAGCTTCTTCGGCAACCGACGCAGCAGTGTGTTCG
ATCCATTCTCGCTCGACGTTTGGGATCCATTCAGGGACTTCCCTTTGCCG
TCTGGCTATTCGTCTGCGGTGTCGTCTCAGTTCCCTCCAGAAACCTCTGC
TGTCGTTAACGCCCGCGTGGACTGGAAGGAAACCCCGGAAGCCCACGCGT
TCAAGGCCGATCTTCCGGGGCTGAGGAAAGAGGAAGTGAAGGTCGAGGTC
GAGGACGACAGGGTGCTTCAGATAAGCGGGCAGAGGGGGATCGAGAGGGA
AGACAAGAACGACACGTGGCATCGCTGGGAGCGCAGCAGCGGCATGTTCT
CCAGGAGGTTCAGGCTGCCCGAGAATGTGAAGATGGATCAGATTAAGGCT
TCCATGGAGAATGGTGTGCTCACTGTTACAGTCCCTAAGGTGGAGGAGGC
CAGGAAAGCCAATGTCAAGGCTATTGAAATTTCTGGCTGATAAATTGATA
TTTAATAAACGAAGATGATTTAAAATTTGTGTTGAATCC
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