CN188274

Overview
NameCN188274
Unique NameCN188274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.883e-24
Identity = 56/145 (38.62%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            T+LGPKG  KM+ + +G++ +T DG  +L +M++  P A ++ +++ +QD   GDGTT+ V+I G LLKQ  + +S G+HP ++++    A   A++VL  + V  E+ DR++L+  A TSL +KV ++ + +L    VDSVL+V
Sbjct:   35 TNLGPKGTMKMLVSGAGDIKLTKDGNVLLQEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVAEGFEIAKEKALEVLEQVKVTKEM-DRETLIDVAKTSLRTKVHTELADILTEAVVDSVLAV 178          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.883e-24
Identity = 59/146 (40.41%), Postives = 93/146 (63.70%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLT-AMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            +SLGP G+DKM+    G+  +TNDGATIL+ ++V  PA K+LVEL++ QD   GDGTT+VV+IA  LLK+   L+ + IHPT I      A   A+  +   ++  V+   +++L+  A TS++SK++   S   + + VD++L+V
Sbjct:   42 SSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAV 187          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.883e-24
Identity = 61/146 (41.78%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            +SLGP G+DKM+    G+VI+TNDGATIL ++EV  PA K+LVEL++ QD   GDGTT+VV++A  LLK+   L+   +HPT I +    A   AV  ++  ++   +   R S+V +A TS++SK++   +     L VD+  +V
Sbjct:   38 SSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAV 183          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.684e-24
Identity = 61/146 (41.78%), Postives = 94/146 (64.38%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            TSLGP G+DKM+    G+V ITNDGATIL  ++V  PAAK+LV+L++ QD   GDGTT+VV++A ALLK    L+S  +HPT + +    A   A   +   MA  V    +  L+  A T+++SK+++  + + + +AVD++++V
Sbjct:   31 TSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQEHMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAV 176          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.311e-23
Identity = 55/145 (37.93%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            T+LGPKG  KM+ + +G++ +T DG  +L++M++  P A ++ +++ +QD   GDGTT+ V+I G LLKQ  + +S G+HP +I++    A   A+ VL  + V  E+ DR++L+  A TSL +KV ++ + +L    VDS+L++
Sbjct:   36 TNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQIKVSREM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI 179          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.311e-23
Identity = 64/147 (43.54%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  325 TSLGPKGMDKMIST----ASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVL 753
            ++LGPKGMDK++ +    ++G + +TNDGATIL  + V  PAAK+LV++S +QD   GDGTT+V V+A  LLK+   L++  IHP  I     +A   A + L   ++    + RD L+K A T+L SK++SQ+    A LAVD+VL
Sbjct:   36 STLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVL 182          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.311e-23
Identity = 64/146 (43.84%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            +SLGP G+DKM+    G+V ITNDGATIL  +EV  PAAK+L EL+  QD   GDGTT+VV+IA  LLK    L+   IHPT I      A   AV  +   + +  +   +D L+ +A TS++SK++       A + VD+VL+V
Sbjct:   34 SSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGKDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAV 179          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.311e-23
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            +SLGP G+DKM+    G+V ITNDGATIL  +EV  PAAK+L EL+  QD   GDGTT+VV+IA  LLK    L+   IHPT +      A   AV  +   + +  +   RD L  +A TS++SK++       A + VD+VL+V
Sbjct:   34 SSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINADELGRDCLTNTAKTSMSSKIIGINGDYFANMVVDAVLAV 179          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.712e-23
Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTL--LAPLAVDSVLSV 759
            +SLGPKG+DKM+     +V ITNDGATI+  MEV  P AK+L+E +K+ D   GDGTT+VVV+AG LL++   LL+  IHPTVI +   KA   ++++L  +A  +   DR  +     T+L+SK  S   TL  +  L +D+ L+V
Sbjct:   34 SSLGPKGLDKMLVEGQ-DVTITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLELLKNIADKISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIDASLAV 179          
BLAST of CN188274 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.712e-23
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  325 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSV 759
            +SLGP G+DKM+    G+V ITNDGATIL  +EV  PAAK+L EL+  QD   GDGTT+VV+IA  LLK    L    IHPT +      A   AV  +   + V  +   RD L+ +A TS++SK++       A + VD+VL++
Sbjct:   34 SSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAI 179          
The following BLAST results are available for this feature:
BLAST of CN188274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TCPZ_CHICK5.883e-2438.62T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPA_YEAST5.883e-2440.41T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_CAEEL5.883e-2441.78T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_SCHMA7.684e-2441.78T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPZ_RABIT1.311e-2337.93T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]
TCPB_CAEEL1.311e-2343.54T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPA_MONDO1.311e-2343.84T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA1_MOUSE1.311e-2343.84T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
THSG_SULSO1.712e-2344.22Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPA_MACFA1.712e-2343.84T-complex protein 1 subunit alpha OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005M08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188274 ID=CN188274; Name=CN188274; organism=Citrus sinensis; type=EST; length=760bp
GAGGGTTCCCTCCAGAACCTCCCCTGAATCTCTGTTTCTAGGGTTTTCGT
AAATTTCATTTCCACTCTCACCCCGATCTTTCCTCTTTGTTTACACTTTC
TGCCACTCCAAAACTCTGATCCGAACAAAATTAGGGTTCTAGGGATCCAA
AAAAATTAGGGTTTTAGGGTTTCTCGATCATACAAAATACAAATGGCATC
ACCAGCAGTAGTACCCTCTCAACCTCGTTCTTCGAAAACGGAGTCCTACG
TGGACAACAAGCGAAAAGAAGACATCCGCCAGGCCAATATCGTGGCGGCG
CGAGCCGTCGCCGATGCCGTGCGTACCAGTCTTGGCCCCAAAGGCATGGA
CAAGATGATCTCCACAGCCAGCGGGGAGGTCATCATCACCAATGACGGCG
CTACCATCTTGAACAAAATGGAAGTCCTCCAGCCCGCCGCCAAGATGCTT
GTTGAACTCTCCAAGTCTCAGGACGCCGCCGCCGGAGATGGTACCACCAC
CGTCGTCGTCATCGCCGGCGCCTTGTTGAAACAGTGCCTCATCCTGTTGT
CCAGCGGAATCCATCCCACCGTTATCTCCGATACTCTACACAAGGCCGCG
ATCCATGCCGTCGATGTGCTCACTGCAATGGCCGTGCCGGTCGAGTTATC
CGACCGTGACAGCTTGGTTAAGTCCGCGAGCACATCGTTGAACAGTAAGG
TCGTGAGTCAGTACTCGACGTTACTGGCGCCGTTAGCTGTTGACAGCGTT
TTATCAGTCG
back to top