CN188272

Overview
NameCN188272
Unique NameCN188272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188272_ssr38 microsatellite CN188272_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:9..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  107 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA---KEWRDRR 505
            L + PV GF   LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP  +F T++WHPN+Y  G VCISILHPP DDP   EL SERW P   V             PN  SPANV+A+   ++W++ +
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  107 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 547
            L +NP   F    V+E NI EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   13 LIENPSENFKIS-VNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.021e-28
Identity = 65/152 (42.76%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  107 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 547
            L +NP   F    V+E N+ EW V + GP DTLYEGG F A + FP NYP  PP + FT+E+WHPN+Y DGRVCISILH    +  G       W PV  ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   13 LTENPSENFKVS-VNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGM-----TWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  104 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 547
            +L +NP   F    V+E N+ EW V + GP DT YEGG F A ++FP NYP  PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   +E            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   12 NLTENPSEHFKVS-VNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGM-----TWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKS 158          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 65/148 (43.92%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  113 KNPVAGFSAGLVDETNIFEWSVTI-IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 553
            K  +  F   L D++NIF W++ + +   D++Y GGFF A M FP ++P SPP  +FT  I+HPNVY DGR+CISILH  G DP   E  +E W PV TVE            PN  SPANV+AA ++R   + +K++V   V RS++
Sbjct:   23 KKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSG-DPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERSKQ 169          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  107 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 547
            L +NP   F    V+E ++ EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDG++CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   13 LIENPSENFKIS-VNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKS 158          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  104 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 547
            +L  NP   F    V+E N+ EW V + GPPDTLYEGG F A + FP  YP  PP + FT+E+WHPN+Y DG++CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   12 NLIVNPSEHFKIS-VNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGM-----TWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKS 158          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 57/146 (39.04%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  116 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 553
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF +E++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSWE 150          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  116 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 553
            +P AG SA  + + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY +G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V RS E
Sbjct:   19 DPPAGVSASPIPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSWE 150          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 57/146 (39.04%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  116 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 553
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  +RD R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of CN188272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
UB2R1_HUMAN6.181e-3448.53Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFB73.510e-2942.11Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP41.021e-2842.76Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK51.742e-2841.18Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST2.275e-2843.92Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC_ASFWA2.971e-2840.79Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM21.248e-2639.87Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC2_NECHA2.204e-2339.04Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_TRIHA3.759e-2338.36Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI6.411e-2339.04Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188272 ID=CN188272; Name=CN188272; organism=Citrus sinensis; type=EST; length=755bp
GAGCCTCAAATATCTGTAGAGGTAGAGCCAATTCCAGCTCTCTCTCTCTA
CTAAAATCATGGCGGCATCTCAGGCAAGTCTCCTCTTGCAAAAACAACTA
AAAGATCTTTGTAAGAACCCTGTTGCTGGGTTTTCTGCCGGGTTGGTGGA
TGAGACAAATATCTTTGAATGGAGTGTTACAATTATTGGACCACCTGATA
CTCTTTATGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCATCAAAC
TACCCTAATAGCCCACCTACAGTGAAGTTTACAACAGAGATTTGGCATCC
TAATGTCTATCCGGATGGGCGTGTCTGCATATCAATCCTTCATCCTCCAG
GTGACGACCCTAATGGATATGAGCTTGCAAGTGAGCGCTGGATGCCTGTT
CATACTGTTGAAAGTATCGTTTTGAGTATCATATCAATGCTTTCCAGTCC
TAATGATGAATCTCCTGCAAATGTCGAAGCTGCAAAAGAATGGAGAGACA
GGAGAGATGACTTCAAGAAGAAAGTAGGCCGCTGTGTGAGAAGATCACAA
GAAATGTTGTAAACCAACTGCAGGCACTCTTTTTTTTCTCTACCTATGTG
TTTGTACGGGAAATGTCTTGATTTAATTGTGTGGGGGGAACTGGGTTCTG
TGGGTACTTGGTCTTGTGTAGACTGGCATTTTGAAGTTCTCTCAACCATC
TCTCTCGTTTTCTCTGCATGGTCAAGTCACTGTAACGACTGGGAACATCC
ATGTA
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