CN188272

Overview
NameCN188272
Unique NameCN188272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  149 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 520
            D  NIF+W  TI GP +T+Y G  +   + FP++YP + P VKF T  +HPNV   G +C+ IL              ++W  ++ V             PN+ESP N +AA  W D++ ++KK
Sbjct:   57 DGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK-EYKK 166          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 2
Query:  104 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFK 517
            DL K+P    SAG V E ++F W  TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  ++ ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  104 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFK 517
            DL K+P    SAG V E ++F W  TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 45/138 (32.61%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  104 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFK 517
            DL K+P    SAG V E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.295e-15
Identity = 41/123 (33.33%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  158 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKV 526
            N+F W   I G  DT++EGG +   M F  ++P++PP  KF   ++HPNVYP G VC+S+L    D           W P  +++            PN E PA  EA + +   R +++K+V
Sbjct:   37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKD-----------WKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRV 148          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.295e-15
Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 2
Query:  104 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFK 517
            DL K+P    SAG V E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  ++ ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  131 FSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKK 523
            FS G  +  NI+EW+  I GP  T YEGG FN  + FP++YP  PP   F T I+HPN+  +G +C++IL              ++W P   VE            PN + P   E  + +++ R  F ++
Sbjct:   27 FSIGQ-NSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNIL-------------KDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQR 143          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = 2
Query:  158 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKV 526
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = 2
Query:  158 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKV 526
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188272 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = 2
Query:  158 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKV 526
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
The following BLAST results are available for this feature:
BLAST of CN188272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
UBE2C_DROME3.407e-1634.68Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC9_ARATH3.407e-1632.61SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC5.812e-1633.33Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH9.914e-1632.61Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC9_CAEEL1.295e-1533.33SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBC10_ARATH1.295e-1531.88Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC31_ARATH2.209e-1532.82Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC9_XENTR2.885e-1534.96SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA2.885e-1534.96SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR2.885e-1534.96SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188272 ID=CN188272; Name=CN188272; organism=Citrus sinensis; type=EST; length=755bp
GAGCCTCAAATATCTGTAGAGGTAGAGCCAATTCCAGCTCTCTCTCTCTA
CTAAAATCATGGCGGCATCTCAGGCAAGTCTCCTCTTGCAAAAACAACTA
AAAGATCTTTGTAAGAACCCTGTTGCTGGGTTTTCTGCCGGGTTGGTGGA
TGAGACAAATATCTTTGAATGGAGTGTTACAATTATTGGACCACCTGATA
CTCTTTATGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCATCAAAC
TACCCTAATAGCCCACCTACAGTGAAGTTTACAACAGAGATTTGGCATCC
TAATGTCTATCCGGATGGGCGTGTCTGCATATCAATCCTTCATCCTCCAG
GTGACGACCCTAATGGATATGAGCTTGCAAGTGAGCGCTGGATGCCTGTT
CATACTGTTGAAAGTATCGTTTTGAGTATCATATCAATGCTTTCCAGTCC
TAATGATGAATCTCCTGCAAATGTCGAAGCTGCAAAAGAATGGAGAGACA
GGAGAGATGACTTCAAGAAGAAAGTAGGCCGCTGTGTGAGAAGATCACAA
GAAATGTTGTAAACCAACTGCAGGCACTCTTTTTTTTCTCTACCTATGTG
TTTGTACGGGAAATGTCTTGATTTAATTGTGTGGGGGGAACTGGGTTCTG
TGGGTACTTGGTCTTGTGTAGACTGGCATTTTGAAGTTCTCTCAACCATC
TCTCTCGTTTTCTCTGCATGGTCAAGTCACTGTAACGACTGGGAACATCC
ATGTA
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