CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 41/138 (29.71%), Postives = 69/138 (50.00%), Query Frame = -2
Query:  307 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 720
            DL ++P +  SAG V + +++ W  +I+GPPD+ Y GG F   + FP++YP  PP +  TT+I+HPN+  +G +C+ IL              ++W P  T+              N + P   E A  ++  R  ++
Sbjct:   12 DLGRDPPSSCSAGPVGD-DLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDIL-------------KDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYE 135          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.334e-15
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = -2
Query:  319 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRR 720
            DL ++P    SAG   + ++F+W  TI+GP D+ + GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  TV             PN + P   E A  ++  R
Sbjct:   12 DLQRDPPVSCSAGPTGD-DMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDIL-------------KEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDR 131          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 42/122 (34.43%), Postives = 56/122 (45.90%), Query Frame = -2
Query:  301 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKK 666
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T+             PN + PA  EA   +   R +++K+
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKR 147          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = -2
Query:  343 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEA 675
            DE++++ W   I GPPDT YE G F   +S P+NYP  PPT+KF T+I+HPN+ +  G +C+ +L                W  ++T++            P  +SP N +A
Sbjct:   26 DESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLL-------------KTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDA 124          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UBC9_RAT3.208e-1534.96SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE3.208e-1534.96SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN3.208e-1534.96SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK3.208e-1534.96SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE3.208e-1534.96SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC9A_DANRE3.208e-1534.96SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC4_CANAL7.146e-1529.71Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC30_ARATH9.334e-1532.09Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC9_MESAU1.219e-1434.43SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBCX_DICDI1.592e-1433.93Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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