CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = -2
Query:  328 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR 720
            DL ++P A  SAG V + +++ W  +I+GP D+ Y GG F   + FP++YP  PP V FTT+I+HPN+   G +C+ IL              ++W P  T+              N + P   E A+ ++
Sbjct:   13 DLGRDPPASCSAGPVGD-DLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDIL-------------KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYK 129          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 40/114 (35.09%), Postives = 56/114 (49.12%), Query Frame = -2
Query:  343 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEA 681
            + D+TNIF+W+  I GP +T YEGG F    S P  YP  PP V+F T+I+HPNV +  G +C+ IL                W P  T++            P  +SP N ++
Sbjct:   28 ICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 128          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N++ W+  I G   T +EGG +  IM F  +YP+ PP  +F  + +HPNVYP G VC+SIL+   D           W P  T++           +PN +SPA       +   ++++ KKV
Sbjct:   37 NLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEAD-----------WKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 41/138 (29.71%), Postives = 68/138 (49.28%), Query Frame = -2
Query:  307 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 720
            DL ++P    SAG V + +++ W  +I+GP D+ Y GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL              ++W P  T+              N + P   E A  ++  R  ++
Sbjct:   13 DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYE 136          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = -2
Query:  304 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 720
            D+ K P +  SA LVD+ N+ +W  T+ GP  + +E G F+  +  P++YP  PPT+KFTT+I+HPN+   DG +C  +                 W P   +             PN ++P   E A++++  R+ F K
Sbjct:   13 DMLKTPPSWCSAHLVDD-NLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF--------------STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNK 137          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 42/126 (33.33%), Postives = 62/126 (49.21%), Query Frame = -2
Query:  298 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 675
            +E NIF W  TI G  DT++EG  +   +SF ++YP  PP VKF T  +HPNV   G +C+ IL              ++W   + V             PN  SP N +AA+ W   +++++K V
Sbjct:   60 EEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLW-SNQEEYRKMV 171          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 42/123 (34.15%), Postives = 57/123 (46.34%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            N+      I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.760e-13
Identity = 40/138 (28.99%), Postives = 66/138 (47.83%), Query Frame = -2
Query:  307 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 720
            +L ++P    SAG   E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              ++W P  T+             PN + P   E A  ++  +  ++
Sbjct:   12 ELQRDPPVSCSAGPTGE-DMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDIL-------------KDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYE 135          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = -2
Query:  325 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRD 675
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              E+W  ++ V             PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.921e-13
Identity = 41/130 (31.54%), Postives = 61/130 (46.92%), Query Frame = -2
Query:  328 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR 717
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P   +            +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UBC5_YEAST1.592e-1432.06Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC21_ARATH2.716e-1435.09Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC9_DICDI3.547e-1432.52Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC4_YEAST3.547e-1429.71Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBCB_DICDI4.632e-1430.71Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC20_ARATH1.032e-1333.33Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC9_PAGMA1.348e-1334.15SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC29_ARATH1.760e-1328.99Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBE2C_HUMAN2.299e-1333.33Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2N_MACFA3.921e-1331.54Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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