CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.921e-13
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = -2
Query:  322 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDR 675
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN+ESP N  AA+ W+++
Sbjct:   55 ESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDIL-------------KDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQ 159          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.921e-13
Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = -2
Query:  298 EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 657
            +W   I G   T + GG +   + +P+ YP+ PP VKF    +HPNVYP G +C+SIL+   D           W P  T++           SPN  SPA   A + +   + ++ KKV
Sbjct:   40 KWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = -2
Query:  325 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRD 675
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = -2
Query:  325 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRD 675
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = -2
Query:  325 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRD 675
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++ V             PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 40/130 (30.77%), Postives = 61/130 (46.92%), Query Frame = -2
Query:  328 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR 717
            L   P  G SA   +E N+  ++V I+GP  + YEGG F   +  P  YP + P V+F T+I+HPN+   GR+C+ IL              ++W P   +            +PN + P +   AK W+
Sbjct:   17 LLSEPAPGISASPSEE-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 132          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = -2
Query:  328 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR 717
            L   P  G SA    E N+  ++V I+GP  + YEGG F   +  P  YP + P V+F T+I+HPN+   GR+C+ IL              ++W P   +            +PN + P +   AK W+
Sbjct:   17 LLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 132          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.141e-12
Identity = 41/130 (31.54%), Postives = 61/130 (46.92%), Query Frame = -2
Query:  328 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR 717
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P   +            +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.141e-12
Identity = 41/130 (31.54%), Postives = 61/130 (46.92%), Query Frame = -2
Query:  328 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR 717
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P   +            +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.141e-12
Identity = 41/130 (31.54%), Postives = 61/130 (46.92%), Query Frame = -2
Query:  328 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR 717
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P   +            +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UBE2C_XENLA3.921e-1333.05Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBC9_YEAST3.921e-1332.50SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBE2C_MOUSE5.122e-1332.48Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA5.122e-1332.48Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN5.122e-1332.48Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC36_ARATH6.689e-1330.77Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH6.689e-1330.77Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_RAT1.141e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB1.141e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.141e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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