CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 42/147 (28.57%), Postives = 63/147 (42.86%), Query Frame = -2
Query:  280 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 720
            D+  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F   YP  PP V F T I+H N+   G +C+ IL              + W P  T+              N   P     A ++   R +  +   +  +R
Sbjct:   58 DITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 190          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 42/147 (28.57%), Postives = 63/147 (42.86%), Query Frame = -2
Query:  280 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 720
            D+  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F   YP  PP V F T I+H N+   G +C+ IL              + W P  T+              N   P     A ++   R +  +   +  +R
Sbjct:   58 DITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 190          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -2
Query:  295 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 678
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -2
Query:  295 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 678
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -2
Query:  295 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 678
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -2
Query:  295 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 678
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 40/120 (33.33%), Postives = 53/120 (44.17%), Query Frame = -2
Query:  283 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 642
            II P +  Y  G F       SNYP+ PP VK  T+++HPN+  DG VC++IL              E W PV  +             PN E P N EAA   +  R  F+  V + +R
Sbjct:   60 IISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILR-------------EDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMR 166          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 38/122 (31.15%), Postives = 56/122 (45.90%), Query Frame = -2
Query:  310 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDF 675
            +E+N+ +    IIG   + YEGG FN  +  P  YP  PP ++F T I+HPN+   GR+C+ IL  P   P G       W P   +             PN + P   + + E++  R  F
Sbjct:   27 NESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLP---PKG------AWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVF 139          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = -2
Query:  298 FSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 693
            F   +VDE NIF W V I GP ++LYE   F   +   ++YP S P VKF T I H NV   G +C++IL   G + +   + S  W  +  ++            PN E P N E A  +R+ +  + KK+
Sbjct:   27 FQINMVDE-NIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNAS-LNIISIIWSIIVLLD-----------QPNPEDPFNSELASLYRNDKLSYDKKI 145          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 41/147 (27.89%), Postives = 64/147 (43.54%), Query Frame = -2
Query:  280 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 720
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F  +YP  PP V F T I+H N+   G +C+ IL              + W P  T+              N   P     A ++   R +  +   +  +R
Sbjct:   66 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 198          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UB2E1_MOUSE9.659e-1228.57Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN9.659e-1228.57Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UB2L3_PONAB1.261e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE1.261e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN1.261e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN1.261e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBC12_DROME1.648e-1133.33NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBE2T_XENLA2.152e-1131.15Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC1_MIMIV2.152e-1134.09Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UB2E2_MOUSE2.152e-1127.89Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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