CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 39/127 (30.71%), Postives = 58/127 (45.67%), Query Frame = -2
Query:  304 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 681
            LVDE N  E    I GPPDT YEGG +   +  P  YP +PP V+F T+IWHPN+    G +C+ IL              ++W    T+            +   + P +   A +++   + FK+
Sbjct:   31 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ 143          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = -2
Query:  280 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 639
            + P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKR 182          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 39/136 (28.68%), Postives = 59/136 (43.38%), Query Frame = -2
Query:  313 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDD 720
            ++  +P    SAG   + N++EW  TI+GPP ++YEGG F   + F   YP  PP V F T I+H N+   G +C+ IL              + W P  T+              N   P     A ++   R++
Sbjct:   97 EITLDPPPNCSAGPKGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREE 218          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 39/138 (28.26%), Postives = 63/138 (45.65%), Query Frame = -2
Query:  283 GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 696
            G +    D  +I  ++++I  P D LY+   F   ++ PS YP  PP V   T ++HPN+  +G VC++IL              + WMPV  +             PN + P N +AA+   D +  F+  V + +R
Sbjct:   94 GCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILR-------------QDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLR 217          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = -2
Query:  280 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 639
            + P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKR 182          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UBE2K_BOVIN8.177e-1130.71Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2F_RAT8.177e-1130.58NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBCD2_DROME8.177e-1128.68Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC12_DICDI8.177e-1128.26NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UB2FA_MOUSE8.177e-1130.58NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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