CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188271_ssr775 microsatellite CN188271_ssr775:775..786. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:27..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 50/147 (34.01%), Postives = 77/147 (52.38%), Query Frame = -2
Query:  277 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 717
            L ++P AG S G   + NI  W+  I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V             PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   16 LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQS 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = -2
Query:  277 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 708
            +P AG S G   + NI  W+  I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V             PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   19 DPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQS 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = -2
Query:  277 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 717
            L ++P AG S G   E NI  W   I GP +T +E G F   + F   YPN PPTVKF ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN  AA+ +++ R +++K+V + V +S
Sbjct:   16 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL-------------QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 50/147 (34.01%), Postives = 77/147 (52.38%), Query Frame = -2
Query:  277 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 717
            L ++P AG S G   + NI  W+  I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V             PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   16 LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = -2
Query:  277 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 717
            L  +P AG S G   E NI  W   I GP D+++EG  F   + F   YPN  PTVKF ++++HPNVY DG +C+ IL               +W P++ +             PN  SPAN E+A+ +R+ + ++ +KV   V +S
Sbjct:   16 LQSDPPAGIS-GAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDIL-------------QNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQS 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.942e-20
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = -2
Query:  265 AGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL-HPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 699
            + +  G ++  +   W +      D+LY G    A+M FPS+YP  PPT+KF ++++HPN+Y DG++CISIL      D + +    ++W PV  +            SPN  SPANV+A+  +RD  +++ K+V R  R   E L
Sbjct:   53 SAYPRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = -2
Query:  304 GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 696
            G SA    ++N+  W+ TI GP DT YEG  F   MSFP+NYP SPPT+ FT+ +WHPNV   G +C+ IL              ++W  V+ V+            PN+ SP N +AA+ W     ++K+
Sbjct:   47 GISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDIL-------------KDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 51/147 (34.69%), Postives = 73/147 (49.66%), Query Frame = -2
Query:  277 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 717
            L  +P  G S G     N+  W+  I GP DT +E G F  +++F  +YPN PPTVKF ++++HPNVY +G +C+ IL               RW P + V             PN  SPAN EAA  +R+   ++ ++V   V  S
Sbjct:   16 LSTDPPGGIS-GAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEAS 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  277 AGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 687
            +G  +  NI  W+  I GPP+T +E G F   ++F   YPN PPTV+F ++++HPN+Y +G +C+ IL               RW P + V             PN  SPANV+AA+ +++   +++++V + V  S
Sbjct:   25 SGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDIL-------------QNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELS 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 53/139 (38.13%), Postives = 70/139 (50.36%), Query Frame = -2
Query:  304 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 720
            +L   P  G SA   D  NIF W  TI G  DT+YE   F   + FP++YP  PPTVKF T+ +HPNV  +G +C+ IL              ++W PV+ V             PN+ESP N  AA  W   +D++KK
Sbjct:   17 NLMMGPSPGISA-FPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDIL-------------KDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW-SNQDEYKK 140          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UBC2_ARATH3.912e-2134.01Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_MEDSA5.110e-2134.03Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC1_CAEEL5.110e-2136.73Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC1_ARATH5.110e-2134.01Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_DICDI1.138e-2034.69Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
Y1A1_ENCCU1.942e-2034.25Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC11_SCHPO4.326e-2037.40Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC2_USTMA7.378e-2034.69Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_CRYNE2.804e-1932.85Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2C_DICDI1.391e-1838.13Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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