CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.427e-17
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = -2
Query:  280 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 720
            DL ++P +  SAG V E ++F W  TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T+             PN + P   E A  ++  R  ++       R+
Sbjct:   12 DLGRDPPSSCSAGPVGE-DLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRK 144          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.427e-17
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = -2
Query:  304 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 720
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT+I+HPN+  +G +C+ IL               +W P  TV             PN + P   E A  ++  R+ + +
Sbjct:   12 DLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNR 136          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = -2
Query:  304 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 720
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +  +C+ IL               +W P  T+             PN + P   E A+ ++  RD + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.846e-17
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = -2
Query:  307 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 720
            DL K+P +  SAG V E ++F W  TI+GPP++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   12 DLQKDPPSNCSAGPVAE-DMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 135          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = -2
Query:  298 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 666
            ++  W V I G P T +EGG +   M+FP  YP  PP  +FT  ++HPNVYP G VC+SIL+             E W P  T++            PN  SPA  EA   ++  + +++K+V
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRV 148          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = -2
Query:  280 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 720
            DL K+P +  SAG V + ++F W  TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T+             PN + P   E A  ++  R  ++       R+
Sbjct:   12 DLGKDPPSSCSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRK 144          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = -2
Query:  280 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 720
            DL ++P +  SAG V E ++F W  TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T+             PN + P   E A  ++  R  ++       R+
Sbjct:   12 DLGRDPPSSCSAGPVGE-DLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRK 144          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = -2
Query:  304 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 720
            DL ++P+      LVD+ N+F W+ T +GP D++Y GG F+  + FP +YP  PPT++FTT I+HPN   +G VC++I            L  + + P   +             PN + P     A+++R+ R  F K
Sbjct:   18 DLREHPIPDIRVNLVDD-NLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI------------LKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 45/127 (35.43%), Postives = 60/127 (47.24%), Query Frame = -2
Query:  340 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAA 720
            D+ ++P A  SAG V E +IF W  TI+GP D+ Y GG F   + F S+YP  PP V F T+++HPN+   G +C+ IL              E+W P  T              PN   P   E A
Sbjct:   12 DMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDIL-------------KEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIA 125          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = -2
Query:  307 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 720
            DL K+P    SAG V E ++F W  TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPNV  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UBC1_MAGGR3.427e-1731.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D4_HUMAN3.427e-1733.81Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D3_BOVIN4.476e-1733.09Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC11_ARATH5.846e-1733.33Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC9_SCHPO7.635e-1734.96SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC4_SCHPO7.635e-1731.97Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_COLGL9.972e-1731.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC14_SCHPO9.972e-1732.37Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC12_ARATH1.701e-1635.43Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC28_ARATH2.901e-1634.06Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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