CN188256

Overview
NameCN188256
Unique NameCN188256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL
Sbjct:   89 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL
Sbjct:   89 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDE LL
Sbjct:   89 TDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL
Sbjct:   89 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL
Sbjct:   89 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL
Sbjct:   89 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL
Sbjct:   89 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL
Sbjct:   89 TDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LL
Sbjct:   89 TDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLL 124
[Close]
BLAST of CN188256 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:  561 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLL 668
            TDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE LL
Sbjct:   89 TDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLL 124
The following BLAST results are available for this feature:
BLAST of CN188256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IF5A4_SOLLC8.197e-1397.22Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLLC8.197e-1397.22Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A3_SOLLC3.115e-1294.44Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_NICPL3.115e-1294.44Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A1_TOBAC3.115e-1294.44Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_SOLTU3.115e-1294.44Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A1_NICPL3.115e-1294.44Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A3_SOLTU4.068e-1294.44Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLTU5.313e-1291.67Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A2_SOLLC5.313e-1294.44Eukaryotic translation initiation factor 5A-2 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188256 ID=CN188256; Name=CN188256; organism=Citrus sinensis; type=EST; length=669bp
TTTTTTTTTTTTTTTTTGGCTGTAGACTAACAATAATACCCTTAAATTAA
ACCACACAAGGCCACGGTCATGGCCATGGCCCTATATTACATGATTATGA
AGAAGGAAACACAAAACATTACGAGTGATGGGTGACACAACACGCACATC
ACTCCACACACTAGTAGTAGACCATCATAAAAACGAAGTAGAGAATTTTT
CTTTTTTTTTAATCACCCTTACATTATTCTTAACCCCCACAATATTTAGG
CACACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTATTAGTGAC
TACCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTGCAGTTA
CCTTCAGTCTCAGCAGCCTGAACGTCCATGACAACAACGGTGCTGACAAA
GCTCAAGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCCTTCTTCA
CACACTGGCTCCTGTCAGCGCAGTCGCAGTTGCCGCAGGTGTCCGACATG
TTGATTGAGCTTAGAACTTGGAATTTAAAACTGGAAATAGAGGGCTCTTT
ATTGTACGAAACCGACTATCAGTTGATTGATATTTCTGAGGATGGATTTG
TGAGTTTGCTGACTGAAAATGGGAACACCAAGGATGATCTGAGGCTCCCA
ACCGATGAGACTCTGCTGA
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