CN188253

Overview
NameCN188253
Unique NameCN188253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 428
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
The following BLAST results are available for this feature:
BLAST of CN188253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MEF2C_MOUSE4.370e-1553.62Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN4.370e-1553.62Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN4.370e-1553.62Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA4.370e-1553.62Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT4.370e-1553.62Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB4.370e-1553.62Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG4.370e-1553.62Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE4.370e-1553.62Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN4.370e-1553.62Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK4.370e-1553.62Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188253 ID=CN188253; Name=CN188253; organism=Citrus sinensis; type=EST; length=612bp
AGTTGCTTCTCTCCCTGCTCTGTTCTCATTTTTTGTTACCTTAGAAAGAA
GAGAGAAATCCCAAATCCTGCTGAATCCTGCTGAAACCTTTGTTTCTGCT
GTCCTTTTGATTCTCAAAATCATTCTACATTCCTTTGGTTAGATAGCAGG
TGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCAGCAGGAAGAGAG
GAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGATCGAGATCAAGCG
GATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCAAGAGGCGCAATG
GTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGTGATGCTGAGGTT
TCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGAGTATTCCAACAA
CAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCACTGCAGATACCT
CAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTCTACCAGCAAGAA
GCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAATTCAAACAGAAA
CATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGGAACTCAAGAACA
TGGAGACTCGTT
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