CN188253

Overview
NameCN188253
Unique NameCN188253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 38/104 (36.54%), Postives = 65/104 (62.50%), Query Frame = 3 
Query:  300 GLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN--SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            GLLKKA EL++LCDA++ +I+FSS G+++E+S+   S++  IDRY+K + + +        N Q Y  E  +++ +I  +Q + R+  GE L+ L   E+  +E
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPVYD----NQQVY-CEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLE 100
The following BLAST results are available for this feature:
BLAST of CN188253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AP32_ASAEU2.244e-1136.54MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188253 ID=CN188253; Name=CN188253; organism=Citrus sinensis; type=EST; length=612bp
AGTTGCTTCTCTCCCTGCTCTGTTCTCATTTTTTGTTACCTTAGAAAGAA
GAGAGAAATCCCAAATCCTGCTGAATCCTGCTGAAACCTTTGTTTCTGCT
GTCCTTTTGATTCTCAAAATCATTCTACATTCCTTTGGTTAGATAGCAGG
TGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCAGCAGGAAGAGAG
GAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGATCGAGATCAAGCG
GATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCAAGAGGCGCAATG
GTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGTGATGCTGAGGTT
TCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGAGTATTCCAACAA
CAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCACTGCAGATACCT
CAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTCTACCAGCAAGAA
GCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAATTCAAACAGAAA
CATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGGAACTCAAGAACA
TGGAGACTCGTT
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