CN188253

Overview
NameCN188253
Unique NameCN188253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:22..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.710e-27
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS----VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGK+++KRIEN  NRQVTF KRRNGLLKKA+E+SVLCDAEV+ IVFS +G+LYEY+ +S    +    +RY  A     +  S  E N   +  E  KL+ +I  +Q  +++++GE L  LN KEL+ +E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGN---WCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLE 129          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.234e-27
Identity = 59/129 (45.74%), Postives = 93/129 (72.09%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV+L++FSS+G+L+EYS +S ++  ++RY +             + ++ +  E AKL+ ++  ++ + RN +GE L  L+ KEL+++E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLE 129          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.977e-27
Identity = 62/137 (45.26%), Postives = 94/137 (68.61%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK--------ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGK+++KRIENT NRQVTF KRR+GLLKKA E+SVLCDAEV+LI+FS++G+LY+Y+ +S +   ++RY++         +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWC--------HEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLE 129          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 4.977e-27
Identity = 64/131 (48.85%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK-ATADTSNTGSICEANAQF-YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRG++E+KRIEN  NRQVTF KRR GLLKKA E+SVLCDAEVSLIVFS +G+L+EYS+ S ++  ++RY++ + A+          NAQ  +  E ++L+ +I  ++ + R+ LGE L  ++ K+L+N+E
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLE 131          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.500e-27
Identity = 66/128 (51.56%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGKIEIKRIEN  +RQVTF KRR+GLLKKA ELSVLCDAEV++IVFS  G+L+EYS+  +K T+ RY        N  S   + A+    E   L+ Q+S +Q  +  + G+ L+ L FKEL+++E
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRY-------GNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLE 121          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.489e-27
Identity = 62/137 (45.26%), Postives = 93/137 (67.88%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK--------ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGK+++KRIEN  NRQVTF KRR+GLLKKA E+SVLCDAEV+LI+FS++G+LYEY+ +S +   ++RY++         +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWC--------HEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLE 129          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.109e-26
Identity = 59/129 (45.74%), Postives = 92/129 (71.32%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+N+S ++  ++RY++ +            +   +  E  KL+ ++  +Q + ++ +GE L  L+ KEL+N+E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLE 129          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.109e-26
Identity = 60/129 (46.51%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+ +S ++  ++RY++ +            +   +  E AKL+ ++  +Q + +  +GE L  LN KEL+N+E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLE 129          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.891e-26
Identity = 61/130 (46.92%), Postives = 91/130 (70.00%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LIVFS RG+LYE+++ S + TI+RY+  T +     ++ + + +  + +A  L  ++  ++   R +LGE L   + +EL ++E +
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGNKTV-QQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVK 129          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.470e-26
Identity = 60/129 (46.51%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRG ++++RIEN  NRQVTF KRRNGLLKKA+E+SVLCDA+V+LIVFS++G+LYE+ S++S++  ++RY++ + D          + + +  E   L+ ++  +Q S R +LGE L  L  KEL+ +E
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLE 129          
The following BLAST results are available for this feature:
BLAST of CN188253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MAD15_ORYSJ1.710e-2749.24MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL8_SINAL2.234e-2745.74Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
MAD14_ORYSI4.977e-2745.26MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CAL_ARATH4.977e-2748.85Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AGL15_ARATH6.500e-2751.56Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD14_ORYSJ8.489e-2745.26MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL8_SOLLC1.109e-2645.74Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLCO1.109e-2646.51Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD50_ORYSJ1.891e-2646.92MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD18_ORYSJ2.470e-2646.51MADS-box transcription factor 18 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188253 ID=CN188253; Name=CN188253; organism=Citrus sinensis; type=EST; length=612bp
AGTTGCTTCTCTCCCTGCTCTGTTCTCATTTTTTGTTACCTTAGAAAGAA
GAGAGAAATCCCAAATCCTGCTGAATCCTGCTGAAACCTTTGTTTCTGCT
GTCCTTTTGATTCTCAAAATCATTCTACATTCCTTTGGTTAGATAGCAGG
TGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCAGCAGGAAGAGAG
GAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGATCGAGATCAAGCG
GATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCAAGAGGCGCAATG
GTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGTGATGCTGAGGTT
TCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGAGTATTCCAACAA
CAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCACTGCAGATACCT
CAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTCTACCAGCAAGAA
GCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAATTCAAACAGAAA
CATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGGAACTCAAGAACA
TGGAGACTCGTT
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