CN188253

Overview
NameCN188253
Unique NameCN188253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:22..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.436e-23
Identity = 58/129 (44.96%), Postives = 86/129 (66.67%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSV--KSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNM 602
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA EL+VLCDA+VS+I+ SS G+L+E+ + S+  K   D Y+K          +  ++ +  Q++  KL+    N++   R  +GESL+ LN+++L+ +
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVG-----VDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEEL 124          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.268e-22
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            M R KI+IK+I+N+T RQVTF KRR GL KKA ELSVLCDA+V+LI+FSS G+L++YS++S+K  ++R    + +                   ++L  +IS   +  R M GE L GLN +EL+ +E
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLE 128          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.268e-22
Identity = 56/130 (43.08%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS--VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGKIEIKRIEN++NRQVT+ KRRNG++KKA E+SVLCDA VS+I+F+S G+++E+ + S  +   +D Y K +        + +   +    E  +++ +  +MQ   R++ GE ++ LN+KEL  +E
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGK-----RLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLE 125          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNM 602
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA+ELSVLCDA+VS+I+ SS  +L+EY     + K   D+Y+KA         +  ++ +  Q+   KL     N++   R  +GESL+ L ++++ N+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVG-----VDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNL 124          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA+EL+VLCDA VS+I+FSS  +L+EY   N + K  +D Y+     T +   +     +  Q+   KL     N++   +  LGE L  L+ +EL+ +E
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQ-----TISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLE 125          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.820e-22
Identity = 58/130 (44.62%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN--SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGKIEIKRIEN+TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S++  I++Y+ AT   S+   I   + Q    E  +++ ++  ++   R   G+ LS L   ++ ++E
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT--NSHFEEI--NHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLE 126          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 54/130 (41.54%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN--SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRG++E+K+IEN TNRQVTF KRR GLLKKA EL++LCDA++ +IVFS  G++YEYS+    + +  DRY KA +       +     Q   QE  +++ + + ++   R  +G+ L+ L  +++ N+E
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDV----QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLE 126          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN--SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGKIEIKRIEN TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S++  I+ Y+  T    NT      + Q    E  ++R ++  +    R   G+ LS L   ++ ++E
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVT----NTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLE 126          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 53/128 (41.41%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            M R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDA+V+LI+FSS G+L+E+ ++S+K  ++R+   + +                 + A++  +I++  +  R M GE L GL+ +EL+ +E
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLE 128          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATAD-TSNTGSIC-EANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNME 605
            MGRGKIEIKRIEN+TNRQVTF KRR G+LKKA E+ VLCDAEV +++FSS G+L +Y      S      +      +N+G I  +   +    E  +++ +  NMQ   R+M GE L+ L  KEL  +E
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIE 130          
The following BLAST results are available for this feature:
BLAST of CN188253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MADS1_PETHY7.436e-2344.96Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
JOIN_SOLLC1.268e-2244.53MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
GLOB_ANTMA1.268e-2243.08Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
DEFA_ANTMA1.657e-2244.96Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP3_ARATH2.826e-2245.38Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
M17_MAIZE4.820e-2244.62MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
MAD31_ORYSJ6.295e-2241.54MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD29_ORYSJ6.295e-2244.62MADS-box transcription factor 29 OS=Oryza sativa s... [more]
SVP_ARATH8.222e-2241.41MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MADS4_ORYSJ1.402e-2146.15MADS-box transcription factor 4 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188253 ID=CN188253; Name=CN188253; organism=Citrus sinensis; type=EST; length=612bp
AGTTGCTTCTCTCCCTGCTCTGTTCTCATTTTTTGTTACCTTAGAAAGAA
GAGAGAAATCCCAAATCCTGCTGAATCCTGCTGAAACCTTTGTTTCTGCT
GTCCTTTTGATTCTCAAAATCATTCTACATTCCTTTGGTTAGATAGCAGG
TGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCAGCAGGAAGAGAG
GAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGATCGAGATCAAGCG
GATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCAAGAGGCGCAATG
GTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGTGATGCTGAGGTT
TCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGAGTATTCCAACAA
CAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCACTGCAGATACCT
CAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTCTACCAGCAAGAA
GCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAATTCAAACAGAAA
CATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGGAACTCAAGAACA
TGGAGACTCGTT
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