CN188250

Overview
NameCN188250
Unique NameCN188250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188250 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  306 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 566
            D KE P ++VF+ D+PGL+         +  +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   53 DVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
BLAST of CN188250 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  309 SQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 590
            S  A A +DW ETP +HV + ++PGL          +G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CN188250 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  306 ETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 557
            E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   52 EHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CN188250 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  306 KETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 560
            +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   59 RETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of CN188250 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = -3
Query:  306 ETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 557
            E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   51 EHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of CN188250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_SOYBN1.920e-1239.0817.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP16_ORYSJ2.507e-1240.0016.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS177_ARATH5.585e-1240.0017.7 kDa class II heat shock protein OS=Arabidopsi... [more]
SP21_STIAU2.772e-1137.65Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HS176_ARATH2.772e-1138.8217.6 kDa class II heat shock protein OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005L20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188250 ID=CN188250; Name=CN188250; organism=Citrus sinensis; type=EST; length=598bp
TTTTTTTTTTTACTCGCATTACAAAATATATTTTATTGCATCACATTTTT
ATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTCTT
GCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAAGC
TCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAAAT
TTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCACTT
AGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTTA
GGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGCTC
CACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTGC
TCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTGCTCCTTGCTC
CTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTCAC
TTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTGAG
GAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCC
back to top