CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RAV T+E   FA+++GL F+E S
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 154
[Close]
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 1 
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TRR TF ++  WL++ + H + N+ +ML+GNK DL H  AV TE+G+ +A++  L FME S
Sbjct:   10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETS 156
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_RAT2.581e-4256.46Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT2.581e-4256.46Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB2.581e-4256.46Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG2.581e-4256.46Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE2.581e-4256.46Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN2.581e-4256.46Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK2.581e-4256.46Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA2.581e-4256.46Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN2.581e-4256.46Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAA1B_ARATH2.581e-4254.42Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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