CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS1_NEUCR (Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKSCL +Q     F   +D TI   +  +  TIDN+   L I DTAGQE + ++   Y R   G LLV+ I  RE+F  +  + +   R     +  ++++GNK DL   R VS +EG+  A E G  ++E S
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQGHFLDEYDPTIEDSY-RKQCTIDNEVALLDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMIIVGNKYDLRGERVVSEQEGQALAAEFGTKYIETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +Q     F   +D TI   +  +  TID++ + L + DTAGQE + ++   Y R   G LLVY I    +F  L S+ +   R   + N+ ++++GNKCDL   R VS E+G   A      F+E S
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSY-RKQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RABT1_DICDI (Ras-related protein RabT1 OS=Dictyostelium discoideum GN=rabT1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI-TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA--RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 591
            L K II+GD   GKS +L ++    F+ +   +IGV+F  +    ++ K  K+QIWD    + FR +T SYY+GA G +L+YD T +E+FN+L  W+ +   +   + N TI++IGNKCDL +   +   + +QF
Sbjct:   30 LVKVIILGDNKTGKSSILRRYHYNEFE-LGVSSIGVDFIKKDYGMVNGKYYKIQIWDVNSCDRFRLLTHSYYKGAHGFMLLYDCTNQESFNNLQFWINEIINKSPNSNNSTIVIIGNKCDLVNGIKIDPIKSKQF 163          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RERG_MOUSE (Ras-related and estrogen-regulated growth inhibitor OS=Mus musculus GN=Rerg PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  202 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            K  I G  GVGKS ++++F  KRF   +D T+   +     TID++ + ++I DTAGQE   +I R  + R   G +LVYDIT R +F     L + L++ ++  N  +T++L+GNK DL H R VSTEEGE+ A E    F E S
Sbjct:    8 KLAIFGRAGVGKSAIVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEVKKPKN--VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECS 148          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RERG_BOVIN (Ras-related and estrogen-regulated growth inhibitor OS=Bos taurus GN=RERG PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  202 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            K  I G  GVGKS L+++F  KRF   +D T+   +     TID++ + ++I DTAGQE   +I R  + R   G +LVYDIT R +F     L + L++ ++  N  +T++L+GNK DL H R VSTEEGE+ A E    F E S
Sbjct:    8 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVTMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECS 148          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAPA_DISOM (Ras-related protein O-Krev OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +P  L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++ +   F+E+S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQPCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + ID++   L + DTAGQE + ++   Y R   G LLVY IT R +F  ++++ +   R        ++++ NKCDL + R V   EG   A+  G  F+E S
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETS 153          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E F ++   Y +   G +LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E G+  A +    FME S
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETS 146          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++GD GVGKS + +QF    F   +D TI   +  + + ID++   L I DTAGQE + ++   + R   G +L+Y IT   TF  +    E  AR     +  ++L+GNKCDL   R V T  G   AK++   F EAS
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQCL-IDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQVPTSAGRDLAKQYNCQFFEAS 154          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++L+GNK DL   R VS+ EG   A+E G  FME S
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETS 146          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_NEUCR3.395e-1836.11Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 S... [more]
RAS1_CANAL3.395e-1835.42Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RABT1_DICDI3.395e-1837.78Ras-related protein RabT1 OS=Dictyostelium discoid... [more]
RERG_MOUSE4.434e-1841.10Ras-related and estrogen-regulated growth inhibito... [more]
RERG_BOVIN4.434e-1841.78Ras-related and estrogen-regulated growth inhibito... [more]
RAPA_DISOM4.434e-1835.86Ras-related protein O-Krev OS=Discopyge ommata PE=... [more]
RAS_LENED5.791e-1834.03Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAS3_DROME5.791e-1836.11Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAS2_RHIRA5.791e-1836.11Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAP2A_PONAB5.791e-1836.11Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
back to top