CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 51/145 (35.17%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +    + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++ +   F+E+S
Sbjct:    4 YKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIEDSY-REQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS + +QF    F   +D TI   +  +   ID+ P KL I DTAGQE F ++   Y R   G LLV+ +    +F+ +  +     R        ++++GNKCDL H++ VS EE +  ++   + ++E S
Sbjct:    6 YKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSY-TKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECS 148          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  202 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG 606
            K +++GD   GK+ L   F  + F   +  TIG++F  R IT+  N  + LQ+WD  GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + L+GNK DL H R V  ++  +F +E+G
Sbjct:   14 KIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFCQENG 152          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 51/145 (35.17%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++     F+E+S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR--QHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   A + E     +     + ++++GNK DL  RR V  +E    A+E G+ ++E S
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB28_BOVIN (Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  202 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG 606
            K +++GD   GK+ L   F  + F   +  TIG++F  R IT+     + LQ+WD  GQ     +   Y  GA G LLVYD+T  ++F +L  W   ++   + +     + L+GNK DL H R V  E+  +F +E+G
Sbjct:   14 KIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGSLNVTLQVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENG 152          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 53/154 (34.42%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  169 NQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N  N +   + +  I+GD GVGK+ +  QF    F   +D TI   +  + I + +K   L I DTAGQ+   ++   + R   G +LVY IT + +FN + ++ E   R     ++ IM+IGNK DL + R V+  EG++ A+  G+ FME S
Sbjct:   24 NCNNNNKNNIVQLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIEDSY-RKQICVSDKSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQVTYHEGKELAQRLGMSFMEVS 176          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED--------------------ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            L+K +++GD GVGK+ L +Q   + F   +D TI   +  + + ID +   L++ DTAGQE + ++   + R   G +LVY I+ R +F  +  +                       A  + +A + IML+GNK D    R VST+EG   A+E G  F EAS
Sbjct:    8 LYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSY-RKQVVIDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEAS 170          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP1A_RAT (Ras-related protein Rap-1A OS=Rattus norvegicus GN=Rap1a PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 51/145 (35.17%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++     F+E+S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP1A_MOUSE (Ras-related protein Rap-1A OS=Mus musculus GN=Rap1a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 51/145 (35.17%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++     F+E+S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RP1BL_HUMAN4.902e-1735.17Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RAS2_DROME4.902e-1732.64Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
RAB28_RAT4.902e-1734.53Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RAP1B_RAT6.402e-1735.17Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RALB_MOUSE6.402e-1734.25Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RAB28_BOVIN6.402e-1733.81Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 ... [more]
RASV_DICDI8.362e-1734.42Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RAS2_NEUCR8.362e-1732.32Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RAP1A_RAT8.362e-1735.17Ras-related protein Rap-1A OS=Rattus norvegicus GN... [more]
RAP1A_MOUSE8.362e-1735.17Ras-related protein Rap-1A OS=Mus musculus GN=Rap1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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