CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP2B_MOUSE (Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++L+GNK DL   R VS  EG+  A+E    FME S
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETS 146          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++L+GNK DL   R VS  EG+  A+E    FME S
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETS 146          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++L+GNK DL   R VS  EG+  A+E    FME S
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETS 146          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RABM_DICDI (Ras-related protein RabM OS=Dictyostelium discoideum GN=rabM PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 42/133 (31.58%), Postives = 78/133 (58.65%), Query Frame = 1
Query:  202 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-RAVSTEEGEQFAK 597
            K I +GD+ VGK+ +   F   +++ +++ T+   F ++ +TI+N+P+ L +WDT  QE F  ++  YYR +    L +DI   ++F +L  W+++AR+     +  +LIG K D+    +++S E  EQ+ K
Sbjct:    7 KIITLGDSYVGKTSVFNNFVTGKYE-INECTVSPSFYSKTLTIENEPVILNVWDTCSQERFNGLSPIYYRWSNCYTLCFDIHNEKSFKNLDKWMDEARKFCIGKVPFVLIGTKKDIPRTDKSISKERIEQWCK 138          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + I ID +   L + DTAGQE + ++   Y R   G LLVY IT R +F  ++++ +   R        ++++ NKCDL + R V   EG   AK      +E S
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETS 152          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAS1_DROVI (Ras-like protein 1 OS=Drosophila virilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G LLV+ +   ++F  + ++ E  ++  +A  + ++L+GNKCDLA    V  E+  + AK++G+ ++E S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VQNEQAREVAKQYGIPYIETS 145          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 40/135 (29.63%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-RAVSTEEGEQFAK 597
            + K I +GD+ VGK+ L   + +  ++     +IG ++  + + ++NK + L +WDT GQE F++ +  Y+RGA    L +DI   E+F +L  W+++  ++   N+  +L+G K D+    +++S    EQ+ K
Sbjct:    7 MLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCK 141          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            L +  I+GD GVGK+ + +QF    F   +D TI   +  + + ID++   L I DTAGQ+   ++   + R   G +LVY IT R +F+ +  + E   R     ++ IM+IGNK DL   R V+ +EG+  A+  G+ FME S
Sbjct:    9 LVRLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTYQEGKDLARCLGMSFMEVS 152          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 561
            FK +++GD GVGK+  + +     F+  +  T GV     ++     PI+  IWDTAGQE    +   YY GA  A++++D+T R T+ ++  W +D  +    N+ I+L+GNK D   R+
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTRICE-NIPIVLVGNKVDSKDRK 131          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 549
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ SW +D  +    N+ I+L GNK D+
Sbjct:   11 FKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCE-NIPIVLCGNKVDI 126          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2B_MOUSE1.863e-1635.42Ras-related protein Rap-2b OS=Mus musculus GN=Rap2... [more]
RAP2B_HUMAN1.863e-1635.42Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG1.863e-1635.42Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RABM_DICDI1.863e-1631.58Ras-related protein RabM OS=Dictyostelium discoide... [more]
RAS_CRYNE2.433e-1634.03Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RAS1_DROVI2.433e-1632.64Ras-like protein 1 OS=Drosophila virilis GN=Ras85D... [more]
RABL_DICDI2.433e-1629.63Ras-related protein RabL OS=Dictyostelium discoide... [more]
RASZ_DICDI4.150e-1635.86Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]
RAN_TETTH4.150e-1633.88GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RANT_RAT5.420e-1635.04GTP-binding nuclear protein Ran, testis-specific i... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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